RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 ZNF687Q8N1G0 1237 aa5.39□□□□□ -1.55
USF3-204ENST00000496826 PAQR8Q8TEZ7 354 aa5.39□□□□□ -1.55
USF3-204ENST00000496826 EAF2Q96CJ1 260 aaPredicted RBP5.39□□□□□ -1.55
USF3-204ENST00000496826 SEH1LQ96EE3 360 aa5.39□□□□□ -1.55
USF3-204ENST00000496826 UTP23Q9BRU9 249 aaKnown RBP5.39□□□□□ -1.55
USF3-204ENST00000496826 ANAPC13Q9BS18 74 aa5.39□□□□□ -1.55
USF3-204ENST00000496826 OPN3Q9H1Y3 402 aaPredicted RBP5.39□□□□□ -1.55
USF3-204ENST00000496826 SPATA6Q9NWH7 488 aaPredicted RBP5.39□□□□□ -1.55
USF3-204ENST00000496826 IGSF9Q9P2J2 1179 aa5.39□□□□□ -1.55
USF3-204ENST00000496826 CA2P00918 260 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ZNF25P17030 456 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 DRD5P21918 477 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 FPR2P25090 351 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 DIO1P49895 249 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 NPY4RP50391 375 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CRYBB1P53674 252 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 TAGLNQ01995 201 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 NOGQ13253 232 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 AFMIDQ63HM1 303 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 GDF6Q6KF10 455 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 SLC25A26Q70HW3 274 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ANKRD33Q7Z3H0 272 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 SP8Q8IXZ3 490 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 FRMD1Q8N878 549 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 LRRN4CLQ8ND94 238 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TMEM190Q8WZ59 177 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TFAP2BQ92481 460 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 RAX2Q96IS3 184 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 AKIRIN1Q9H9L7 192 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 IL36AQ9UHA7 158 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 SLC23A1Q9UHI7 598 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ZNF835Q9Y2P0 537 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 BOLA1Q9Y3E2 137 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CDC42BPGQ6DT37 1551 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CRHR1P34998 444 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ACAA2P42765 397 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 ANKRD55Q3KP44 614 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TMEM128Q5BJH2 165 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ANGEL2Q5VTE6 544 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 LRRC56Q8IYG6 542 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 AQP11Q8NBQ7 271 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 MRPS24Q96EL2 167 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 GALNT14Q96FL9 552 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TM6SF2Q9BZW4 377 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 LIN28AQ9H9Z2 209 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 S100A14Q9HCY8 104 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 EHFQ9NZC4 300 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 PRRC2BQ5JSZ5 2229 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 PTHLHP12272 177 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ICAM3P32942 547 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 SH3BP2P78314 561 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 DLK1P80370 383 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 EDDM3AQ14507 147 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 OR1C1Q15619 314 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 SMIM21Q3B7S5 101 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 C6orf136Q5SQH8 315 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 FAM53AQ6NSI3 398 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 GPR153Q6NV75 609 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ZNF562Q6V9R5 426 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ASCL5Q7RTU5 278 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 AGBL5Q8NDL9 886 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 JMJD8Q96S16 334 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CDX2Q99626 313 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 TSPAN16Q9UKR8 245 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 FBXO4Q9UKT5 387 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 RBFOX3A6NFN3 312 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 LRP3O75074 770 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TPSB2P20231 275 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 MTNR1AP48039 350 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CMC4P56277 68 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 LMAN2Q12907 356 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TPSAB1Q15661 275 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 PRSS53Q2L4Q9 553 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 IGSF11Q5DX21 431 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ELFN2Q5R3F8 820 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TEPPQ6URK8 271 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 LRRC25Q8N386 305 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 LRRC52Q8N7C0 313 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CLDN22Q8N7P3 220 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 OR1N1Q8NGS0 311 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TMEM37Q8WXS4 190 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 NAT8BQ9UHF3 227 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ENTPD2Q9Y5L3 495 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 TMEM212A6NML5 194 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 ANKRD63C9JTQ0 380 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 MBTPS2O43462 519 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 RHBDL1O75783 438 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CRYAAP02489 173 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 RABIFP47224 123 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 CXCL12P48061 93 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 GP2P55259 537 aaKnown RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 ZNF788Q6ZQV5 615 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 PRR18Q8N4B5 295 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 NANOGP1Q8N7R0 232 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 OR5M11Q96RB7 305 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 MYOZ1Q9NP98 299 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 MN1Q10571 1320 aaPredicted RBP5.38□□□□□ -1.55
USF3-204ENST00000496826 AGPAT2O15120 278 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 C5AR1P21730 350 aa5.38□□□□□ -1.55
USF3-204ENST00000496826 GJA5P36382 358 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms