RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, human

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-222	ENST00000496567	CNOT2	Q9NZN8	540 aa	Known RBP	18.92	■□□□□ 0.62
C9orf3-222	ENST00000496567	ANKHD1	Q8IWZ3	2542 aa	Known RBP	18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	IGHV1-18	A0A0C4DH31	117 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	SLC1A7	O00341	560 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	SYNGR3	O43761	229 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	XPNPEP2	O43895	674 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	CCDC159	P0C7I6	412 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	APLNR	P35414	380 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	KCTD18	Q6PI47	426 aa	Predicted RBP	18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	RHOU	Q7L0Q8	258 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	ZNF584	Q8IVC4	421 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	CPEB3	Q8NE35	698 aa	Known RBP	18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	OR1J2	Q8NGS2	313 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	OR1F12	Q8NHA8	337 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	SLAMF6	Q96DU3	332 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	ATF6B	Q99941	703 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	ESRP2	Q9H6T0	727 aa	Known RBP	18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	KCNN3	Q9UGI6	736 aa		18.91	■□□□□ 0.62
C9orf3-222	ENST00000496567	CECR9	P0C854	216 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	PIP	P12273	146 aa	Predicted RBP	18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	STOM	P27105	288 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	HTR5A	P47898	357 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	BEX5	Q5H9J7	111 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	ACBD7	Q8N6N7	88 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	ZNF540	Q8NDQ6	660 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	SLC30A7	Q8NEW0	376 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	RNF133	Q8WVZ7	376 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	GGH	Q92820	318 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	MS4A3	Q96HJ5	214 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	COQ7	Q99807	217 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	CENPM	Q9NSP4	180 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	UBAP1	Q9NZ09	502 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	TPRKB	Q9Y3C4	175 aa		18.9	■□□□□ 0.62
C9orf3-222	ENST00000496567	OR6C6	A6NF89	314 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	ZNF878	C9JN71	531 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567		J3QRE1	110 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	CELA3B	P08861	270 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	APEX1	P27695	318 aa	Known RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	DCK	P27707	260 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	NR1H2	P55055	460 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	TBC1D28	Q2M2D7	210 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	RBM48	Q5RL73	367 aa	Known RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	ZNF786	Q8N393	782 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	OR52I1	Q8NGK6	324 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	MYCBP	Q99417	103 aa	Predicted RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	TBX5	Q99593	518 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	KCNS3	Q9BQ31	491 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	FGF20	Q9NP95	211 aa	Predicted RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	PNRC2	Q9NPJ4	139 aa	Known RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	INPP5E	Q9NRR6	644 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	DDX28	Q9NUL7	540 aa	Known RBP	18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	PSORS1C1	Q9UIG5	152 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	COPS3	Q9UNS2	423 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	PCDHGB5	Q9Y5G0	923 aa		18.89	■□□□□ 0.62
C9orf3-222	ENST00000496567	FASN	P49327	2511 aa	Known RBP	18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	COL12A1	Q99715	3063 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	DAPL1	A0PJW8	107 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	COX6B1	P14854	86 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	CD40	P25942	277 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	GDI2	P50395	445 aa	Known RBP	18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	TAF13	Q15543	124 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	OR10S1	Q8NGN2	331 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	COPS4	Q9BT78	406 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	BLOC1S6	Q9UL45	172 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567	KLHDC2	Q9Y2U9	406 aa		18.89	■□□□□ 0.61
C9orf3-222	ENST00000496567		A0A1W2PQL4	384 aa	Predicted RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	GOSR1	O95249	250 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	IGHA1	P01876	353 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	CRYAA	P02489	173 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	GRB2	P62993	217 aa	Known RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	EGR3	Q06889	387 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	DAZAP2	Q15038	168 aa	Predicted RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	NCMAP	Q5T1S8	102 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	ZNF322	Q6U7Q0	402 aa	Predicted RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	MYPOP	Q86VE0	399 aa	Predicted RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	STX19	Q8N4C7	294 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	MRPL48	Q96GC5	212 aa	Known RBP	18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	PLPPR2	Q96GM1	343 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	TMEM80	Q96HE8	168 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	POM121L2	Q96KW2	1035 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	AMELY	Q99218	206 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	MRO	Q9BYG7	248 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	CDH20	Q9HBT6	801 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	MYRF	Q9Y2G1	1151 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	PRR14L	Q5THK1	2151 aa		18.88	■□□□□ 0.61
C9orf3-222	ENST00000496567	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	C5orf49	A4QMS7	147 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	DPRX	A6NFQ7	191 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	H2BFM	P0C1H6	154 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	NAAA	Q02083	359 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	BSPH1	Q075Z2	132 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	ST3GAL4	Q11206	333 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	DEGS2	Q6QHC5	323 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	AHSA2	Q719I0	299 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	SPATC1	Q76KD6	591 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	KRT77	Q7Z794	578 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	IPCEF1	Q8WWN9	437 aa	Predicted RBP	18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	MYDGF	Q969H8	173 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	SPTSSA	Q969W0	71 aa		18.87	■□□□□ 0.61

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