RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 OR1F12Q8NHA8 337 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 SNX33Q8WV41 574 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 NEU4Q8WWR8 484 aaPredicted RBP13.69□□□□□ -0.22
LIME1-209ENST00000494776 DNAJC9Q8WXX5 260 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 FAM168AQ92567 244 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 DUS3LQ96G46 650 aaKnown RBP13.69□□□□□ -0.22
LIME1-209ENST00000494776 DDOQ99489 341 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 TPK1Q9H3S4 243 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 PAPOLBQ9NRJ5 636 aaKnown RBP13.69□□□□□ -0.22
LIME1-209ENST00000494776 CMC2Q9NRP2 79 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 SLCO1C1Q9NYB5 712 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 TAAR3PQ9P1P4 343 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 LHFPL6Q9Y693 200 aa13.69□□□□□ -0.22
LIME1-209ENST00000494776 RNF223E7ERA6 249 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 CLPTM1O96005 669 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 HMGN1P05114 100 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 GYPBP06028 91 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 ZNF250P15622 560 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 ZNF23P17027 643 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 PAICSP22234 425 aaKnown RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 FMO3P31513 532 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 PDLIM4P50479 330 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 SLC25A1P53007 311 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 PPP1CBP62140 327 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 MAD2L1BPQ15013 274 aaPredicted RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 ELFN2Q5R3F8 820 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 ZNF362Q5T0B9 420 aaPredicted RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 TMEM154Q6P9G4 183 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 BIVMQ86UB2 503 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 ZDHHC13Q8IUH4 622 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 OR6K6Q8NGW6 343 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 SLC25A40Q8TBP6 338 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 LRTOMTQ8WZ04 291 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 PLEKHA8Q96JA3 519 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 COX4I2Q96KJ9 171 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 PITX2Q99697 317 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 RBM4Q9BWF3 364 aaKnown RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 REG4Q9BYZ8 158 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 HDHD2Q9H0R4 259 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 MYEF2Q9P2K5 600 aaKnown RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 KCNG2Q9UJ96 466 aa13.68□□□□□ -0.22
LIME1-209ENST00000494776 MAP1AP78559 2803 aaPredicted RBP13.68□□□□□ -0.22
LIME1-209ENST00000494776 OR6C6A6NF89 314 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 TVP23AA6NH52 213 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 NGFP01138 241 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 MT-ND5P03915 603 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 SPI1P17947 270 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 DAPP51397 102 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 KPNB1Q14974 876 aaKnown RBP13.67□□□□□ -0.22
LIME1-209ENST00000494776 ACSM5Q6NUN0 579 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 RFPL4BQ6ZWI9 263 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 PYDC1Q8WXC3 89 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 SLC7A6Q92536 515 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 OR2J1Q9GZK6 312 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 SEMA6AQ9H2E6 1030 aa13.67□□□□□ -0.22
LIME1-209ENST00000494776 GSX1Q9H4S2 264 aaPredicted RBP13.67□□□□□ -0.22
LIME1-209ENST00000494776 MYOZ1Q9NP98 299 aaPredicted RBP13.67□□□□□ -0.22
LIME1-209ENST00000494776 MRPL22Q9NWU5 206 aaKnown RBP13.67□□□□□ -0.22
LIME1-209ENST00000494776 SETD2Q9BYW2 2564 aaPredicted RBP13.67□□□□□ -0.22
LIME1-209ENST00000494776 IGHV4-30-2A0A087WSY4 118 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 FAM183AA6NL82 134 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 PRR23D1E9PI22 279 aaPredicted RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 PRR23D2P0DMB1 279 aaPredicted RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 CLUP10909 449 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 NAT2P11245 290 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 DAOP14920 347 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 GGT2P36268 569 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 BLVRAP53004 296 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 ACTR3P61158 418 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 HIST1H3AP68431 136 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 HIST2H3PS2Q5TEC6 136 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 SLC18B1Q6NT16 456 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 FAHD1Q6P587 224 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 CLEC9AQ6UXN8 241 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 DNM1P46Q6ZS02 220 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 HIST2H3AQ71DI3 136 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 C10orf67Q8IYJ2 551 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 MAPK1IP1LQ8NDC0 245 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 KLF14Q8TD94 323 aaPredicted RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 ZNRF4Q8WWF5 429 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 MARS2Q96GW9 593 aaKnown RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 COG8Q96MW5 612 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 RAB3IPQ96QF0 476 aaPredicted RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 DCLRE1CQ96SD1 692 aaKnown RBP13.66□□□□□ -0.22
LIME1-209ENST00000494776 COQ7Q99807 217 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 SMR3AQ99954 134 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 NMNAT2Q9BZQ4 307 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 OR51V1Q9H2C8 321 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 MED20Q9H944 212 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 KRT84Q9NSB2 600 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 TBCCD1Q9NVR7 557 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 CYB5R1Q9UHQ9 305 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 ATPIF1Q9UII2 106 aa13.66□□□□□ -0.22
LIME1-209ENST00000494776 ZFHX3Q15911 3703 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 IGLV3-9A0A075B6K5 115 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 PLSCR5A0PG75 271 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 IGHV3-13P01766 116 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 DBHP09172 617 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 SPARCP09486 303 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 SLC25A16P16260 332 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms