RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ZNF275Q9NSD4 429 aaPredicted RBP12.88□□□□□ -0.35
USP39-217ENST00000491659 TBCCD1Q9NVR7 557 aa12.88□□□□□ -0.35
USP39-217ENST00000491659 ATPIF1Q9UII2 106 aa12.88□□□□□ -0.35
USP39-217ENST00000491659 B9D1Q9UPM9 204 aa12.88□□□□□ -0.35
USP39-217ENST00000491659 SAMHD1Q9Y3Z3 626 aaKnown RBP12.88□□□□□ -0.35
USP39-217ENST00000491659 TANC2Q9HCD6 1990 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.87□□□□□ -0.359e-10■■■■■ 32.2
USP39-217ENST00000491659 IGLV1-36A0A0B4J1U3 117 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 DCTN6O00399 190 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 PPIHO43447 177 aaKnown RBP12.87□□□□□ -0.35
USP39-217ENST00000491659 GPANK1O95872 356 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TGFAP01135 160 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TUBG1P23258 451 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 LIPAP38571 399 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TMEM33P57088 247 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 MS4A2Q01362 244 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.87□□□□□ -0.35
USP39-217ENST00000491659 CCNIQ14094 377 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TSTQ16762 297 aaKnown RBP12.87□□□□□ -0.35
USP39-217ENST00000491659 MEP1BQ16820 701 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 FAM209AQ5JX71 171 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 OR2T5Q6IEZ7 315 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TRPM8Q7Z2W7 1104 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 AQP11Q8NBQ7 271 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 GJC3Q8NFK1 279 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 OR4C15Q8NGM1 316 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 OR2T29Q8NH02 315 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 OR1F12Q8NHA8 337 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 BCAS4Q8TDM0 211 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 GTF3AQ92664 365 aaKnown RBP12.87□□□□□ -0.35
USP39-217ENST00000491659 CLPTM1LQ96KA5 538 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 COG8Q96MW5 612 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 THTPAQ9BU02 230 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 BEX2Q9BXY8 128 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 FN3KQ9H479 309 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 SRA1Q9HD15 236 aaKnown RBP12.87□□□□□ -0.35
USP39-217ENST00000491659 TUBG2Q9NRH3 451 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TBC1D23Q9NUY8 699 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 TAS2R1Q9NYW7 299 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 GRIP1Q9Y3R0 1128 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 MALRD1Q5VYJ5 2156 aa12.87□□□□□ -0.35
USP39-217ENST00000491659 ANK3Q12955 4377 aaKnown RBP12.86□□□□□ -0.35
USP39-217ENST00000491659 ABCA2Q9BZC7 2435 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 IGHV1-69-2A0A0G2JMI3 117 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 OR6C6A6NF89 314 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 KIAA1324LA8MWY0 1029 aaPredicted RBP12.86□□□□□ -0.35
USP39-217ENST00000491659 RER1O15258 196 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 SPRY3O43610 288 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 TIMM8AO60220 97 aaPredicted RBP12.86□□□□□ -0.35
USP39-217ENST00000491659 CDC14BO60729 498 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 RP2O75695 350 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 IFNA2P01563 188 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 IGHV1-46P01743 117 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 HLA-DQA2P01906 255 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 RAP2AP10114 183 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 HNF1AP20823 631 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 IGFBP5P24593 272 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 IL2RGP31785 369 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 MMP15P51511 669 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 SLC36A3Q495N2 470 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 DNAL1Q4LDG9 190 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 CCDC92Q53HC0 331 aaPredicted RBP12.86□□□□□ -0.35
USP39-217ENST00000491659 RASSF6Q6ZTQ3 369 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 USP51Q70EK9 711 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 OR6V1Q8N148 313 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 LINC01356Q8N9X3 169 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 OR52E2Q8NGJ4 325 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 ELMOD3Q96FG2 381 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 DCLRE1CQ96SD1 692 aaKnown RBP12.86□□□□□ -0.35
USP39-217ENST00000491659 DIRC2Q96SL1 478 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 COQ7Q99807 217 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 SOX7Q9BT81 388 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 HDHD2Q9H0R4 259 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 NARFLQ9H6Q4 476 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 LHFPL6Q9Y693 200 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 U3KQV3 271 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 JMJD1CQ15652 2540 aa12.86□□□□□ -0.35
USP39-217ENST00000491659 OR6C68A6NDL8 312 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 ZSCAN5BA6NJL1 495 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 J3QW42 95 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 GASTP01350 101 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 FAM157CP0CG43 387 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 CRYBB2P43320 205 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 RGS6P49758 472 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 COX10Q12887 443 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 TRAP1Q12931 704 aaKnown RBP12.85□□□□□ -0.35
USP39-217ENST00000491659 PPP1R8Q12972 351 aaKnown RBP12.85□□□□□ -0.35
USP39-217ENST00000491659 GK3PQ14409 553 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 MICAQ29983 383 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 HFEQ30201 348 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 TMEM255AQ5JRV8 349 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 SLC35F1Q5T1Q4 408 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 ZNF770Q6IQ21 691 aaPredicted RBP12.85□□□□□ -0.35
USP39-217ENST00000491659 ZBTB46Q86UZ6 589 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 SLC26A10Q8NG04 563 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 OR5L1Q8NGL2 311 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 OR2AJ1Q8NGZ0 328 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 SLC7A6Q92536 515 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 CDADC1Q9BWV3 514 aa12.85□□□□□ -0.35
USP39-217ENST00000491659 PLA2G12AQ9BZM1 189 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms