RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SIRT5Q9NXA8 310 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 WSB2Q9NYS7 404 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PADI1Q9ULC6 663 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 OR13C7P0DN81 318 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 UBE2MP61081 183 aaKnown RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 SMIM15Q7Z3B0 74 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 ANKRD33Q7Z3H0 272 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 C16orf52Q8NHV5 167 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PATE1Q8WXA2 126 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 ATOH1Q92858 354 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 GPR173Q9NS66 373 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 A4GNTQ9UNA3 340 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 COL18A1P39060 1754 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 EPXP11678 715 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 SELENBP1Q13228 472 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 CCDC71Q8IV32 467 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 JAM3Q9BX67 310 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PLA2G12AQ9BZM1 189 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PATZ1Q9HBE1 687 aaKnown RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PRSS37A4D1T9 235 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 ICOSLGO75144 302 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 TMEM127O75204 238 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 OLFM2O95897 454 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 OR4E1P0C645 316 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 PSMB6P28072 239 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 ST6GAL1P15907 406 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 TGM1P22735 817 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 PDZK1IP1Q13113 114 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 KCNAB1Q14722 419 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 THEM4Q5T1C6 240 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 CORO6Q6QEF8 472 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 IL21Q9HBE4 155 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 KIR2DS1A0A191URI9 304 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 CXorf51AA0A1B0GTR3 108 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 JTBO76095 146 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 HLA-HP01893 362 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 CD3DP04234 171 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 KIR2DS4P43632 304 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 NKX2-1P43699 371 aaPredicted RBP14.96□□□□□ -0.01
COL7A1-210ENST00000487017 MMP15P51511 669 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 RAB11AP62491 216 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 BTG2P78543 158 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 KIR2DS1Q14954 304 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 TESK1Q15569 626 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 SLC25A35Q3KQZ1 300 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 MSRB3Q8IXL7 192 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 ANKRD53Q8N9V6 530 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 ARHGDIGQ99819 225 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 NEURL2Q9BR09 285 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 ZNF2Q9BSG1 426 aaPredicted RBP14.96□□□□□ -0.01
COL7A1-210ENST00000487017 CDCP1Q9H5V8 836 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 GAREM1Q9H706 876 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 B3GAT1Q9P2W7 334 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 R4GMQ9 66 aa14.96□□□□□ -0.01
COL7A1-210ENST00000487017 B3GALNT1O75752 331 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 QDPRP09417 244 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 HLA-DOBP13765 273 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 MYOGP15173 224 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 PSMB3P49720 205 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 RBP2P50120 134 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 TLE1Q04724 770 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 SLC17A1Q14916 467 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.96□□□□□ -0.02
COL7A1-210ENST00000487017 CDH26Q8IXH8 852 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 SIRT6Q8N6T7 355 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 OR2AK2Q8NG84 335 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 SMIM4Q8WVI0 70 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 PLEKHF2Q9H8W4 249 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 PLSCR3Q9NRY6 295 aa14.96□□□□□ -0.02
COL7A1-210ENST00000487017 H0YIG0 161 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 GPR85P60893 370 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 TOR2AQ5JU69 321 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 OR11L1Q8NGX0 322 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 H1FXQ92522 213 aaKnown RBP14.95□□□□□ -0.02
COL7A1-210ENST00000487017 TXN2Q99757 166 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 ASH2LQ9UBL3 628 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 KCND3Q9UK17 655 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 LGALS8O00214 317 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 PLXDC2Q6UX71 529 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 RNF165Q6ZSG1 346 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 STT3BQ8TCJ2 826 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 SFT2D1Q8WV19 159 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 ZNF75AQ96N20 296 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 ADIRFQ15847 76 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 LINC00696Q6ZRV3 163 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 BTLAQ7Z6A9 289 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 PLK3Q9H4B4 646 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 TUBAL3A6NHL2 446 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 VAMP5O95183 116 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 C1QAP02745 245 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 CLEC3BP05452 202 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 TPOP07202 933 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 RAE1P78406 368 aaKnown RBP14.95□□□□□ -0.02
COL7A1-210ENST00000487017 RBPJQ06330 500 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 NKAIN1Q4KMZ8 207 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 SYT13Q7L8C5 426 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 FBXL6Q8N531 539 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 C20orf24Q9BUV8 137 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 DUSP13Q9UII6 198 aa14.95□□□□□ -0.02
COL7A1-210ENST00000487017 YKT6O15498 198 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms