RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GLS2Q9UI32 602 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 GMEB2Q9UKD1 530 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 TEX13DA0A0J9YY54 714 aaPredicted RBP10.7□□□□□ -0.7
MSH6-204ENST00000445503 GABRG2P18507 467 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 CEBPGP53567 150 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 ATP1B3P54709 279 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 PLAURQ03405 335 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 ANGPTL5Q86XS5 388 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 OR10R2Q8NGX6 335 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 CFHR5Q9BXR6 569 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 CPED1A4D0V7 1026 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 OR2T1O43869 369 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 PNPP00491 289 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 ERCC1P07992 297 aaPredicted RBP10.69□□□□□ -0.7
MSH6-204ENST00000445503 IL32P24001 234 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 BDKRB2P30411 391 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 SMCO1Q147U7 214 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 EEF1A1P5Q5VTE0 462 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 FAM69BQ5VUD6 431 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 LRRTM1Q86UE6 522 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 STOML3Q8TAV4 291 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 NUDT9Q9BW91 350 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 SMIM3Q9BZL3 60 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 SDHAF3Q9NRP4 125 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 MPDZO75970 2070 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 IGHV5-51A0A0C4DH38 117 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 CCDC85CA6NKD9 419 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 ZNF749O43361 778 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 HRH1P35367 487 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 EPHA4P54764 986 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 BAMBIQ13145 260 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 MEF2DQ14814 521 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 NHLRC3Q5JS37 347 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 Q6ZS52 159 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 OR4K15Q8NH41 348 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 A0A0C4DFX4 3053 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 HEATR5AQ86XA9 2040 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 RFPL4AA6NLU0 287 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 RFPL4AL1F8VTS6 287 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 FBXO24O75426 580 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 RAB3AP20336 220 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 POLR2HP52434 150 aaKnown RBP10.69□□□□□ -0.7
MSH6-204ENST00000445503 BIDP55957 195 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 PRTGQ2VWP7 1150 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 KIAA0895LQ68EN5 471 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 SP7Q8TDD2 431 aaPredicted RBP10.69□□□□□ -0.7
MSH6-204ENST00000445503 TMED6Q8WW62 240 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 MAFIPQ8WZ33 124 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 CST11Q9H112 138 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 PCOLCE2Q9UKZ9 415 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 FAM221BA6H8Z2 402 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 A8MVM7 634 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 S100A6P06703 90 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 EMC4Q5J8M3 183 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 BVESQ8NE79 360 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 MARCH1Q8TCQ1 289 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 ZNF304Q9HCX3 659 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 PRR13Q9NZ81 148 aa10.69□□□□□ -0.7
MSH6-204ENST00000445503 SLC22A23A1A5C7 686 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 VSTM2BA6NLU5 285 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 IL33O95760 270 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 ZNF41P51814 821 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 CSNK2A1P68400 391 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 SNTB1Q13884 538 aaKnown RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 SHHQ15465 462 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 CSNK2A3Q8NEV1 391 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 BPIFCQ8NFQ6 507 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 OR5D14Q8NGL3 314 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 OR5H2Q8NGV7 314 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 OR52N5Q8NH56 324 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 SEH1LQ96EE3 360 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 KLHDC3Q9BQ90 382 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 KIF26BQ2KJY2 2108 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 SPTY2D1-AS1A0A0U1RR47 76 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 SERPINF1P36955 418 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 PPP1R1AQ13522 171 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 ZNF660Q6AZW8 331 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 RGS7BPQ6MZT1 257 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 FLVCR1-AS1Q8TAF5 88 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 STK35Q8TDR2 534 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 GPBAR1Q8TDU6 330 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 ZNF426Q9BUY5 554 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 PARP12Q9H0J9 701 aaKnown RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 RPH3AQ9Y2J0 694 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 F5H5K5 113 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 SDCBPO00560 298 aaPredicted RBP10.68□□□□□ -0.7
MSH6-204ENST00000445503 TPPPO94811 219 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 PRH1P02810 166 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 HLA-DOBP13765 273 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 OR1D5P58170 312 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 SKP2Q13309 424 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 FZD2Q14332 565 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 C21orf62-AS1Q17RA5 79 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 FAM76BQ5HYJ3 339 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 BMPERQ8N8U9 685 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 OR5M9Q8NGP3 310 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 LRRC61Q9BV99 259 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 LAT2Q9GZY6 243 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 PPP4R1LQ9P1A2 415 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 YBX2Q9Y2T7 364 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 308.5 ms