RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SMIM28A0A1B0GU29 152 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SEC14L6B5MCN3 397 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 H0Y9J4 135 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SLC9A3R1O14745 358 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SNAI2O43623 268 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SHMT2P34897 504 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 CDC34P49427 236 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 LIM2P55344 173 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 PRPS1P60891 318 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 UBE2KP61086 200 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 TSPAN5P62079 268 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACTA2P62736 377 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACTG2P63267 376 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACTC1P68032 377 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACTA1P68133 377 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 CCDC14Q49A88 953 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 OR2G6Q5TZ20 316 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 DUPD1Q68J44 220 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 UFSP1Q6NVU6 142 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF544Q6NX49 715 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 TFAP2EQ6VUC0 442 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 LINC00336Q6ZUF6 198 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACOT7LQ6ZUV0 252 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SSX7Q7RTT5 188 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 SLC7A5P1Q8MH63 180 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 VKORC1L1Q8N0U8 176 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 OR5T1Q8NG75 326 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 OR2AP1Q8NGE2 309 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 OR51F2Q8NH61 342 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ADAMTS16Q8TE57 1224 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 BAALCQ8WXS3 180 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 IFT81Q8WYA0 676 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 CMTM7Q96FZ5 175 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 OR5B12Q96R08 314 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 CWH43Q9H720 699 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 C6orf50Q9HD87 102 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 ACP6Q9NPH0 428 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 CTPS2Q9NRF8 586 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 USE1Q9NZ43 259 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 MMP17Q9ULZ9 603 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 TSSC4Q9Y5U2 329 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 TMEM210A6NLX4 147 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 HACD1B0YJ81 288 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 PRAMEF26H0Y7S4 382 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 MBTPS2O43462 519 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 SCRG1O75711 98 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 GPX5O75715 221 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 TDP2O95551 362 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 HSPB1P04792 205 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 ADORA2BP29275 332 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 GCKP35557 465 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 RBM34P42696 430 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 MAGEA2P43356 314 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 DSTNP60981 165 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 MAGOHP61326 146 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 SP4Q02446 784 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 BCL2L1Q07817 233 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 IFFO1Q0D2I5 559 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 FADDQ13158 208 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 CDKL4Q5MAI5 379 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 RWDD4Q6NW29 188 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 FAHD1Q6P587 224 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 DNM1P46Q6ZS02 220 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 ABHD13Q7L211 337 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 LHFPL3Q86UP9 236 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 CEND1Q8N111 149 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 UBA3Q8TBC4 463 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 PSMG2Q969U7 264 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 RPEQ96AT9 228 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 EEF1AKMT3Q96AZ1 226 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 MICU1Q9BPX6 476 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 HES7Q9BYE0 225 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 CHIAQ9BZP6 476 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 API5Q9BZZ5 524 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 TMEM38AQ9H6F2 299 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 EXD2Q9NVH0 621 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 SPRR3Q9UBC9 169 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 NAGKQ9UJ70 344 aa3.9□□□□□ -1.79
CCDC88A-206ENST00000430086 POLR3AO14802 1390 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 FRMPD3Q5JV73 1810 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 FABP12A6NFH5 140 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 SMLR1H3BR10 107 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 H7C2Y5 167 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZW10O43264 779 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 GATCO43716 136 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 FKBP6O75344 327 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 EIF3GO75821 320 aaKnown RBP eCLIP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 TNFAIP8O95379 198 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 STSP08842 583 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CT45A6P0DMU7 189 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CT45A5P0DMU8 189 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CT45A7P0DMV0 189 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF250P15622 560 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ELK1P19419 428 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CMA1P23946 247 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 HOXA6P31267 233 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 HOXA9P31269 272 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CSNK1A1P48729 337 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CCR8P51685 355 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 RPL32P62910 135 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms