RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLC6A9P48067 706 aa8.83□□□□□ -1
CD44-207ENST00000425428 ENDOGQ14249 297 aaKnown RBP8.83□□□□□ -1
CD44-207ENST00000425428 GALEQ14376 348 aa8.83□□□□□ -1
CD44-207ENST00000425428 PCK2Q16822 640 aa8.83□□□□□ -1
CD44-207ENST00000425428 PABPC1L2AQ5JQF8 200 aa8.83□□□□□ -1
CD44-207ENST00000425428 CORO6Q6QEF8 472 aa8.83□□□□□ -1
CD44-207ENST00000425428 UGT2A3Q6UWM9 527 aa8.83□□□□□ -1
CD44-207ENST00000425428 TMEM108Q6UXF1 575 aa8.83□□□□□ -1
CD44-207ENST00000425428 LHFPL3Q86UP9 236 aa8.83□□□□□ -1
CD44-207ENST00000425428 WFDC8Q8IUA0 241 aa8.83□□□□□ -1
CD44-207ENST00000425428 ZNF679Q8IYX0 411 aa8.83□□□□□ -1
CD44-207ENST00000425428 FAM169BQ8N8A8 192 aa8.83□□□□□ -1
CD44-207ENST00000425428 TSPAN14Q8NG11 270 aa8.83□□□□□ -1
CD44-207ENST00000425428 OR1F12Q8NHA8 337 aa8.83□□□□□ -1
CD44-207ENST00000425428 ZNRF4Q8WWF5 429 aa8.83□□□□□ -1
CD44-207ENST00000425428 FCGR1BQ92637 280 aa8.83□□□□□ -1
CD44-207ENST00000425428 ZC3HAV1LQ96H79 300 aaKnown RBP8.83□□□□□ -1
CD44-207ENST00000425428 COG8Q96MW5 612 aa8.83□□□□□ -1
CD44-207ENST00000425428 DCLRE1CQ96SD1 692 aaKnown RBP8.83□□□□□ -1
CD44-207ENST00000425428 COQ7Q99807 217 aa8.83□□□□□ -1
CD44-207ENST00000425428 ABHD6Q9BV23 337 aa8.83□□□□□ -1
CD44-207ENST00000425428 ESRP2Q9H6T0 727 aaKnown RBP8.83□□□□□ -1
CD44-207ENST00000425428 ATPIF1Q9UII2 106 aa8.83□□□□□ -1
CD44-207ENST00000425428 GNG8Q9UK08 70 aa8.83□□□□□ -1
CD44-207ENST00000425428 CAB39Q9Y376 341 aaPredicted RBP8.83□□□□□ -1
CD44-207ENST00000425428 LHFPL6Q9Y693 200 aa8.83□□□□□ -1
CD44-207ENST00000425428 SPTBN1Q01082 2364 aaKnown RBP8.82□□□□□ -1
CD44-207ENST00000425428 ZNF462Q96JM2 2506 aa8.82□□□□□ -1
CD44-207ENST00000425428 A0A1W2PQL4 384 aaPredicted RBP8.82□□□□□ -1
CD44-207ENST00000425428 METTL15A6NJ78 407 aa8.82□□□□□ -1
CD44-207ENST00000425428 J3QLW9 94 aa8.82□□□□□ -1
CD44-207ENST00000425428 M0R1B8 84 aa8.82□□□□□ -1
CD44-207ENST00000425428 RER1O15258 196 aa8.82□□□□□ -1
CD44-207ENST00000425428 IGHA1P01876 353 aa8.82□□□□□ -1
CD44-207ENST00000425428 CRYAAP02489 173 aa8.82□□□□□ -1
CD44-207ENST00000425428 SERPINA5P05154 406 aa8.82□□□□□ -1
CD44-207ENST00000425428 ZNF19P17023 458 aa8.82□□□□□ -1
CD44-207ENST00000425428 STOMP27105 288 aa8.82□□□□□ -1
CD44-207ENST00000425428 FOXG1P55316 489 aaPredicted RBP8.82□□□□□ -1
CD44-207ENST00000425428 TAS2R43P59537 309 aa8.82□□□□□ -1
CD44-207ENST00000425428 SLC35A2P78381 396 aa8.82□□□□□ -1
CD44-207ENST00000425428 MVKQ03426 396 aa8.82□□□□□ -1
CD44-207ENST00000425428 C3orf36Q3SXR2 165 aa8.82□□□□□ -1
CD44-207ENST00000425428 LYPD4Q6UWN0 246 aa8.82□□□□□ -1
CD44-207ENST00000425428 SPATC1Q76KD6 591 aa8.82□□□□□ -1
CD44-207ENST00000425428 MDP1Q86V88 176 aa8.82□□□□□ -1
CD44-207ENST00000425428 ZNF283Q8N7M2 679 aa8.82□□□□□ -1
CD44-207ENST00000425428 OR5L1Q8NGL2 311 aa8.82□□□□□ -1
CD44-207ENST00000425428 HTRA1Q92743 480 aa8.82□□□□□ -1
CD44-207ENST00000425428 FBXO17Q96EF6 278 aa8.82□□□□□ -1
CD44-207ENST00000425428 JAM3Q9BX67 310 aa8.82□□□□□ -1
CD44-207ENST00000425428 DUSP21Q9H596 190 aa8.82□□□□□ -1
CD44-207ENST00000425428 ELOVL3Q9HB03 270 aa8.82□□□□□ -1
CD44-207ENST00000425428 TRIM36Q9NQ86 728 aa8.82□□□□□ -1
CD44-207ENST00000425428 ERVK13-1Q9NX77 482 aa8.82□□□□□ -1
CD44-207ENST00000425428 GTF2A1LQ9UNN4 478 aa8.82□□□□□ -1
CD44-207ENST00000425428 KLF2Q9Y5W3 355 aaPredicted RBP8.82□□□□□ -1
CD44-207ENST00000425428 HCFC1P51610 2035 aa8.82□□□□□ -1
CD44-207ENST00000425428 A0A1W2PR80 420 aa8.81□□□□□ -1
CD44-207ENST00000425428 PTAFRP25105 342 aa8.81□□□□□ -1
CD44-207ENST00000425428 RPS27P42677 84 aaKnown RBP8.81□□□□□ -1
CD44-207ENST00000425428 KIR2DL3P43628 341 aa8.81□□□□□ -1
CD44-207ENST00000425428 RGS6P49758 472 aa8.81□□□□□ -1
CD44-207ENST00000425428 IDH3GP51553 393 aaPredicted RBP8.81□□□□□ -1
CD44-207ENST00000425428 TUBA1BP68363 451 aa8.81□□□□□ -1
CD44-207ENST00000425428 TUBA4AP68366 448 aa8.81□□□□□ -1
CD44-207ENST00000425428 PSG4Q00888 419 aa8.81□□□□□ -1
CD44-207ENST00000425428 RAB39AQ14964 217 aa8.81□□□□□ -1
CD44-207ENST00000425428 MED22Q15528 200 aa8.81□□□□□ -1
CD44-207ENST00000425428 RNLSQ5VYX0 342 aa8.81□□□□□ -1
CD44-207ENST00000425428 ZNF774Q6NX45 483 aa8.81□□□□□ -1
CD44-207ENST00000425428 ZNF773Q6PK81 442 aa8.81□□□□□ -1
CD44-207ENST00000425428 TUBA1AQ71U36 451 aa8.81□□□□□ -1
CD44-207ENST00000425428 C1orf174Q8IYL3 243 aa8.81□□□□□ -1
CD44-207ENST00000425428 SYS1Q8N2H4 156 aa8.81□□□□□ -1
CD44-207ENST00000425428 SLC30A7Q8NEW0 376 aa8.81□□□□□ -1
CD44-207ENST00000425428 OR52N1Q8NH53 320 aa8.81□□□□□ -1
CD44-207ENST00000425428 AKR7LQ8NHP1 331 aa8.81□□□□□ -1
CD44-207ENST00000425428 RNF133Q8WVZ7 376 aa8.81□□□□□ -1
CD44-207ENST00000425428 DACH2Q96NX9 599 aa8.81□□□□□ -1
CD44-207ENST00000425428 OR8B4Q96RC9 309 aa8.81□□□□□ -1
CD44-207ENST00000425428 KCNJ15Q99712 375 aa8.81□□□□□ -1
CD44-207ENST00000425428 CDCA4Q9BXL8 241 aa8.81□□□□□ -1
CD44-207ENST00000425428 ZNF696Q9H7X3 374 aa8.81□□□□□ -1
CD44-207ENST00000425428 ERVK-18Q9QC07 812 aa8.81□□□□□ -1
CD44-207ENST00000425428 SCOCQ9UIL1 159 aa8.81□□□□□ -1
CD44-207ENST00000425428 TMEM129A0AVI4 362 aa8.81□□□□□ -1
CD44-207ENST00000425428 F5H5K5 113 aa8.81□□□□□ -1
CD44-207ENST00000425428 SCG5P05408 212 aa8.81□□□□□ -1
CD44-207ENST00000425428 ANXA2P07355 339 aaKnown RBP8.81□□□□□ -1
CD44-207ENST00000425428 HTR1AP08908 422 aa8.81□□□□□ -1
CD44-207ENST00000425428 PATE4P0C8F1 98 aa8.81□□□□□ -1
CD44-207ENST00000425428 DCTDP32321 178 aa8.81□□□□□ -1
CD44-207ENST00000425428 RAD52P43351 418 aa8.81□□□□□ -1
CD44-207ENST00000425428 ZNF83P51522 516 aa8.81□□□□□ -1
CD44-207ENST00000425428 HCCSP53701 268 aa8.81□□□□□ -1
CD44-207ENST00000425428 NR1H2P55055 460 aa8.81□□□□□ -1
CD44-207ENST00000425428 WNT4P56705 351 aa8.81□□□□□ -1
CD44-207ENST00000425428 MALLQ13021 153 aa8.81□□□□□ -1
CD44-207ENST00000425428 TAB1Q15750 504 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms