RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 V9GYS6 101 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NRAPQ86VF7 1730 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SYT5O00445 386 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 XRCC3O43542 346 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CNMDO75829 334 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 KIR2DS2P43631 304 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NCCRP1Q6ZVX7 275 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LINC00346Q8IVM7 164 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 DYNC2LI1Q8TCX1 351 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 GMPR2Q9P2T1 348 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF716A6NP11 495 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 HSPB2A8KAH6 182 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 GIPRP48546 466 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ENDOGQ14249 297 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 HSPB2Q16082 182 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 VMA21Q3ZAQ7 101 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 MARCH8Q5T0T0 291 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LRRTM3Q86VH5 581 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ZC3H3Q8IXZ2 948 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 Q8IYB0 196 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SFT2D1Q8WV19 159 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 BCL2L2Q92843 193 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 YIPF5Q969M3 257 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CXXC1Q9P0U4 656 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ADAMTS6Q9UKP5 1117 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 GPR55Q9Y2T6 319 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SMLR1H3BR10 107 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CDX4O14627 284 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NXPH3O95157 252 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 HPP00738 406 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SSTR4P31391 388 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NKX2-1P43699 371 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CSNK1G2P78368 415 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 OR2G3Q8NGZ4 309 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ST8SIA4Q92187 359 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 FAM3DQ96BQ1 224 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 DHRS4Q9BTZ2 278 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 MED9Q9NWA0 146 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 STRAPQ9Y3F4 350 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SLCO1B1Q9Y6L6 691 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TP53BP1Q12888 1972 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NME4O00746 187 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TAAR5O14804 337 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 NCR1O76036 304 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 CD68P34810 354 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 BEX5Q5H9J7 111 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DGAT2L6Q6ZPD8 337 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 NMNAT3Q96T66 252 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PSD2Q9BQI7 771 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ANKRD60Q9BZ19 345 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DCAF16Q9NXF7 216 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 EBF1Q9UH73 591 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SLC17A4Q9Y2C5 497 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TRAV17A0A0B4J275 112 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 MBLAC1A4D2B0 266 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ARNTLO00327 626 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 JTBO76095 146 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 EPHA2P29317 976 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 IGFBP7Q16270 282 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM52BQ4KMG9 183 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 LYPD4Q6UWN0 246 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 GTF2H5Q6ZYL4 71 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 CBLL1Q75N03 491 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 WDTC1Q8N5D0 677 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 OXGR1Q96P68 337 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM147Q9BVK8 224 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 GON7Q9BXV9 100 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 MMP28Q9H239 520 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 AKR7A3O95154 331 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 LY86O95711 162 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PLK5Q496M5 336 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 BCL7AQ4VC05 210 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 LAIR1Q6GTX8 287 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 GLIPR1L1Q6UWM5 242 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SSX9Q7RTT3 188 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ABI3BPQ7Z7G0 1075 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 NLRP8Q86W28 1048 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PNPLA1Q8N8W4 532 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TSLPQ969D9 159 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 CTDSP1Q9GZU7 261 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 RCE1Q9Y256 329 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 OR51B4Q9Y5P0 310 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF207O43670 478 aaKnown RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 IGHV3-9P01782 118 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 QDPRP09417 244 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 RAB5AP20339 215 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 MTNR1BP49286 362 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 CTSCP53634 463 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ERVFC1P60507 584 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PAFAH1B2P68402 229 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 EGR3Q06889 387 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DOC2BQ14184 412 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TRAT1Q6PIZ9 186 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM108Q6UXF1 575 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 GLIS1Q8NBF1 620 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 FAM71CQ8NEG0 241 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 THAP10Q9P2Z0 257 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 HDGFL3Q9Y3E1 203 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ARL2-SNX15V9GYD0 113 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms