RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GLSO94925 669 aaPredicted RBP13.22□□□□□ -0.29
USP4-203ENST00000415188 MT-ND4P03905 459 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 SPARCP09486 303 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 CTLA4P16410 223 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 PSMB1P20618 241 aaKnown RBP13.22□□□□□ -0.29
USP4-203ENST00000415188 PTGS2P35354 604 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 EMP2P54851 167 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 TAS2R20P59543 309 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 ZNF385CQ66K41 422 aaPredicted RBP13.22□□□□□ -0.29
USP4-203ENST00000415188 PAPD4Q6PIY7 484 aaKnown RBP13.22□□□□□ -0.29
USP4-203ENST00000415188 DEGS2Q6QHC5 323 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 ZNF767PQ75MW2 155 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 PRSS45Q7RTY3 260 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 KRT77Q7Z794 578 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 IZUMO1Q8IYV9 350 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 ADPRHL1Q8NDY3 354 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 OR52N5Q8NH56 324 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 ORAI1Q96D31 301 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 AMELYQ99218 206 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 UTP23Q9BRU9 249 aaKnown RBP13.22□□□□□ -0.29
USP4-203ENST00000415188 C20orf85Q9H1P6 137 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 SLC26A1Q9H2B4 701 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 TMEM165Q9HC07 324 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 CHST11Q9NPF2 352 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 PLSCR3Q9NRY6 295 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 TAS2R8Q9NYW2 309 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 BOLA1Q9Y3E2 137 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 MED13Q9UHV7 2174 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 PCNX3Q9H6A9 2034 aa13.21□□□□□ -0.29
USP4-203ENST00000415188 TNRC6AQ8NDV7 1962 aaKnown RBP13.21□□□□□ -0.29
USP4-203ENST00000415188 FLNCQ14315 2725 aa13.21□□□□□ -0.29
USP4-203ENST00000415188 TRAV8-7A0A075B6U6 113 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 A0A1B0GUH1 482 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 C17orf51A8MQB3 221 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 NPIPA5E9PKD4 350 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 SLC17A2O00624 439 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 AQP8O94778 261 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 TGM6O95932 706 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 PLGP00747 810 aaPredicted RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 HRGP04196 525 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 CD2P06729 351 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 ZNF823P16415 610 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 CDK2P24941 298 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 FAUP35544 74 aaKnown RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 MAGEB1P43366 347 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 FBXW4P57775 412 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 ADAM8P78325 824 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 SSBP1Q04837 148 aaKnown RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 EIF2B1Q14232 305 aaKnown RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 RAB11BQ15907 218 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 PCK2Q16822 640 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 BTBD16Q32M84 506 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 ZNF782Q6ZMW2 699 aaPredicted RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 CPEB2Q7Z5Q1 589 aaKnown RBP13.21□□□□□ -0.3
USP4-203ENST00000415188 CATSPERDQ86XM0 798 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 PHF21AQ96BD5 680 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 MED30Q96HR3 178 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 MRGPRX4Q96LA9 322 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 OR11A1Q9GZK7 315 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 ALKBH4Q9NXW9 302 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 CKLFQ9UBR5 152 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 NPIPA1Q9UND3 350 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 RCE1Q9Y256 329 aa13.21□□□□□ -0.3
USP4-203ENST00000415188 PCSK5Q92824 1860 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 IGHV3-20A0A0C4DH32 117 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 TRBV11-1A0A0K0K1C0 115 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 A0A1W2PNV4 684 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 MEGF11A6BM72 1044 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 ZNF780AO75290 641 aaPredicted RBP13.2□□□□□ -0.3
USP4-203ENST00000415188 ZFAND5O76080 213 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 SULT1A3P0DMM9 295 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 SULT1A4P0DMN0 295 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 CD37P11049 281 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 ACHEP22303 614 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 CCR6P51684 374 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 CAPZA1P52907 286 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 CLDN12P56749 244 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 FOXL2P58012 376 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 GPR85P60893 370 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 Q5BKY6 102 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 METTL11BQ5VVY1 283 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 ANKRD16Q6P6B7 361 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 TMEM205Q6UW68 189 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 SLC22A8Q8TCC7 542 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 GIMAP1Q8WWP7 306 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 WDR77Q9BQA1 342 aaPredicted RBP13.2□□□□□ -0.3
USP4-203ENST00000415188 ABHD6Q9BV23 337 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 DIABLOQ9NR28 239 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 DHDHQ9UQ10 334 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 B3GALT5Q9Y2C3 310 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 R4GMQ9 66 aa13.2□□□□□ -0.3
USP4-203ENST00000415188 MEIKINA0A087WXM9 373 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 LOC100289279A0A1B0GTE1 492 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 A0A1B0GTH9 108 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 C9J4A7 227 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 MS4A18H0YCH9 400 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 FABP7O15540 132 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 SNAPC5O75971 98 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 GPANK1O95872 356 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 MAS1P04201 325 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms