RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 OR6A2O95222 327 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 PLGP00747 810 aaPredicted RBP9.02□□□□□ -0.97
VPS53-202ENST00000389040 TACSTD2P09758 323 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 ELK1P19419 428 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 AHCYP23526 432 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 APEX1P27695 318 aaKnown RBP9.02□□□□□ -0.97
VPS53-202ENST00000389040 PRSS12P56730 875 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 P2RY14Q15391 338 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 TRIQKQ629K1 86 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 SEM1Q6ZVN7 128 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 SPATC1Q76KD6 591 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 FCRLAQ7L513 359 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 KCTD20Q7Z5Y7 419 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 LRRC28Q86X40 367 aaPredicted RBP9.02□□□□□ -0.97
VPS53-202ENST00000389040 CDC20BQ86Y33 519 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 MCEMP1Q8IX19 187 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 Q8N402 240 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 CELF2-AS1Q8N7Q2 184 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 LILRB4Q8NHJ6 448 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 FNDC9Q8TBE3 224 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 RPS4Y2Q8TD47 263 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 HPS1Q92902 700 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 OR14A2Q96R54 314 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 PDCD1LG2Q9BQ51 273 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 OR11A1Q9GZK7 315 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 SLC22A4Q9H015 551 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 BCO1Q9HAY6 547 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 EMC3Q9P0I2 261 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 METRNQ9UJH8 293 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 RASD1Q9Y272 281 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 KLHDC2Q9Y2U9 406 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 IGKV3D-15A0A087WSY6 115 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 LINC00854A0A1B0GVQ3 168 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 A0A1W2PNR3 127 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 A0A1W2PPK0 400 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 TVP23AA6NH52 213 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 FTCDNL1E5RQL4 147 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 PSMD9O00233 223 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 PLPP3O14495 311 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 AGFG2O95081 481 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 TGM6O95932 706 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 IGHMP01871 453 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 HLA-DQB1P01920 261 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 UCHL1P09936 223 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 RAB3BP20337 219 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 OR2B6P58173 313 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 NANOS3P60323 173 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 RPL27P61353 136 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 POU4F3Q15319 338 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 GUSBP1Q15486 140 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ACKR1Q16570 336 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 SLC25A35Q3KQZ1 300 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 FAM214BQ7L5A3 538 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 EGFL6Q8IUX8 553 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 IL17RDQ8NFM7 739 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF417Q8TAU3 575 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF519Q8TB69 540 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 HAVCR2Q8TDQ0 301 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 SSC4DQ8WTU2 575 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 LRRC46Q96FV0 321 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF845Q96IR2 970 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 ADAD1Q96M93 576 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 SNX18Q96RF0 628 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF587Q96SQ5 575 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 INTS14Q96SY0 518 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 MNTQ99583 582 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 TXNIPQ9H3M7 391 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 FANCFQ9NPI8 374 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 MRPL39Q9NYK5 338 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 EXTL2Q9UBQ6 330 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 LAMP5Q9UJQ1 280 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 EMC9Q9Y3B6 208 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 RP1L1Q8IWN7 2480 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 PRSS37A4D1T9 235 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 AQP7P3A6NL99 342 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF879B4DU55 563 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 C3orf80F5H4A9 247 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNHIT1O43257 154 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 SS18L1O75177 396 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 TOXO94900 526 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 UBR5O95071 2799 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 AKR7A3O95154 331 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 CNOT4O95628 575 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 KRT8P05787 483 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 YES1P07947 543 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 TMIGD3P0DMS9 266 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 OR8G3PP0DMU2 310 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 IMPDH2P12268 514 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 TALDO1P37837 337 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 EGR3Q06889 387 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 MRPL28Q13084 256 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 HSD17B12Q53GQ0 312 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 YIF1BQ5BJH7 314 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 C3P1Q6ZMU1 363 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 H1FNTQ75WM6 255 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 AKAP14Q86UN6 197 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 SAMD12Q8N8I0 201 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 C9orf106Q8NAJ2 232 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 PHYHIPQ92561 330 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 RNF166Q96A37 237 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms