RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 BSCL2Q96G97 398 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 GDE1Q9NZC3 331 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 STRAPQ9Y3F4 350 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 MT-ATP6P00846 226 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 DMBX1Q8NFW5 382 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 ASB13Q8WXK3 278 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 PLEKHB1Q9UF11 243 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 FLVCR1Q9Y5Y0 555 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 H3BQ06 376 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 GUCA2AQ02747 115 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 C17orf67Q0P5P2 114 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 RAB30Q15771 203 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 ABHD17BQ5VST6 288 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 AKR1E2Q96JD6 320 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 SUCNR1Q9BXA5 334 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 STRADBQ9C0K7 418 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 COL24A1Q17RW2 1714 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 CYB5BO43169 146 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 XRCC3O43542 346 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 AVPR2P30518 371 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 BSGP35613 385 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 SNRPEP62304 92 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 C15orf54Q8N8G6 183 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 MED9Q9NWA0 146 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 LIMS3P0CW19 117 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 LIMS4P0CW20 117 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 PTGER4P35408 488 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 RAG2P55895 527 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 AGERQ15109 404 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 GNPNAT1Q96EK6 184 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 MYEOVQ96EZ4 313 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 PLEKHA2Q9HB19 425 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 FABP1P07148 127 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 C11orf87Q6NUJ2 197 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 UQCC3Q6UW78 93 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 MRPL43Q8N983 215 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 BPIFCQ8NFQ6 507 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 EMC6Q9BV81 110 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 RAB9BQ9NP90 201 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 MCTS1Q9ULC4 181 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 TRBV5-4A0A0C4DH59 114 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 NDUFB6O95139 128 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 HMGA1P17096 107 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 GCH1P30793 250 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 SNCAP37840 140 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 LTC4SQ16873 150 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 PRAMEF20Q5VT98 475 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 OR2T2Q6IF00 324 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 MAMSTRQ6ZN01 415 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 NECAP1Q8NC96 275 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 OR5AP2Q8NGF4 316 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 OR2G2Q8NGZ5 317 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 STT3BQ8TCJ2 826 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 EMG1Q92979 244 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 KIRREL1Q96J84 757 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 C2orf50Q96LR7 162 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 A4GNTQ9UNA3 340 aa17.8■□□□□ 0.44
CCDC88B-202ENST00000356786 TUSC2O75896 110 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 AQP8O94778 261 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 POU3F2P20265 443 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 TLE1Q04724 770 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ACKR1Q16570 336 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ASTLQ6HA08 431 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 OR51H1Q8NH63 302 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 RXFP4Q8TDU9 374 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF75AQ96N20 296 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 DNMT3BQ9UBC3 853 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 MPPED1O15442 326 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF217O75362 1048 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 GJA4P35212 333 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ARIH2OSQ8N7S6 290 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 OR51E1Q8TCB6 317 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 C8orf33Q9H7E9 229 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 CRLF2Q9HC73 371 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ING1Q9UK53 422 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 RNASEK-C17orf49H0YIS7 233 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ADRA2CP18825 462 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 IRS1P35568 1242 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 FOXK1P85037 733 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 AAED1Q7RTV5 226 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 MISPQ8IVT2 679 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 OR8U1Q8NH10 309 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 DHCR7Q9UBM7 475 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 E5RGE8 158 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 SCGB2A1O75556 95 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 PRSS23O95084 383 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 H3F3AP84243 136 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 OTPQ5XKR4 325 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 CORO6Q6QEF8 472 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 H1FNTQ75WM6 255 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ZFP62Q8NB50 900 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 TOE1Q96GM8 510 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 FBXO4Q9UKT5 387 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF346Q9UL40 294 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 PIGLQ9Y2B2 252 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 NSG2Q9Y328 171 aa17.79■□□□□ 0.44
CCDC88B-202ENST00000356786 UPK1AO00322 258 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 MVDP53602 400 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 DUSP18Q8NEJ0 188 aa17.78■□□□□ 0.44
CCDC88B-202ENST00000356786 OR51A2Q8NGJ7 313 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms