RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC22A24Q8N4F4 322 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 BHLHE23Q8NDY6 225 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 SLC26A10Q8NG04 563 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 SPRYD4Q8WW59 207 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 S100PBPQ96BU1 408 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 FBXO17Q96EF6 278 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 BCO1Q9HAY6 547 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 FKBP7Q9Y680 259 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 E9PI62 339 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 DNPH1O43598 174 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MRPS14O60783 128 aaKnown RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 IL18BPO95998 194 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ZNF12P17014 697 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CELP19835 753 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MSR1P21757 451 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 PCMT1P22061 227 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CTSSP25774 331 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 HSD11B1P28845 292 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 LIPKQ5VXJ0 399 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 RELL2Q8NC24 303 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 RAB2BQ8WUD1 216 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MUL1Q969V5 352 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 TMEM80Q96HE8 168 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ABHD6Q9BV23 337 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 TPK1Q9H3S4 243 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ELOVL3Q9HB03 270 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CCNB1IP1Q9NPC3 277 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 POLE4Q9NR33 117 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 SLCO1C1Q9NYB5 712 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 PSORS1C1Q9UIG5 152 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 GDF2Q9UK05 429 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 HSPE1-MOB4S4R3N1 261 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ITPR2Q14571 2701 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 C5orf49A4QMS7 147 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CD8B2A6NJW9 211 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ZNF99A8MXY4 864 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 RNF224P0DH78 156 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 S100A1P23297 94 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 RBMXP38159 391 aaKnown RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 SOX2P48431 317 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ENTPD1P49961 510 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 DOC2BQ14184 412 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 PABPC1L2AQ5JQF8 200 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 LCN1P1Q5VSP4 162 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MEDAGQ5VYS4 303 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ZNF283Q8N7M2 679 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 OR13C5Q8NGS8 318 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 PDCD1LG2Q9BQ51 273 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 TMED9Q9BVK6 235 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 KCNN2Q9H2S1 579 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 NOX3Q9HBY0 568 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CREBBPQ92793 2442 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MBD3L4A6NDZ8 208 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 MBD3L3A6NE82 208 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 MBD3L5A6NJ08 208 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 M0R1B8 84 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 TMCC2O75069 709 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 RAB36O95755 333 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 H2BFMP0C1H6 154 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 CCDC159P0C7I6 412 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 APEHP13798 732 aaKnown RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 TGFBR3Q03167 851 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 SF3B4Q15427 424 aaKnown RBP eCLIP8.07□□□□□ -1.129e-6■■□□□ 14.4
USP4-202ENST00000351842 TBRG1Q3YBR2 411 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ANKRD16Q6P6B7 361 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 HDDC2Q7Z4H3 204 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 SPARTQ8N0X7 666 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 OR6S1Q8NH40 331 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MBD3L2Q8NHZ7 208 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 MYDGFQ969H8 173 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 KCNS3Q9BQ31 491 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 MROQ9BYG7 248 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 ACTR6Q9GZN1 396 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 RACGAP1Q9H0H5 632 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 TMEM38BQ9NVV0 291 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 FOXD3Q9UJU5 478 aaPredicted RBP8.07□□□□□ -1.12
USP4-202ENST00000351842 LHFPL6Q9Y693 200 aa8.07□□□□□ -1.12
USP4-202ENST00000351842 UBR5O95071 2799 aaPredicted RBP8.06□□□□□ -1.12
USP4-202ENST00000351842 SS18L1O75177 396 aaPredicted RBP8.06□□□□□ -1.12
USP4-202ENST00000351842 TXNDC12O95881 172 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 ANOS1P23352 680 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 COL8A1P27658 744 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 OR3A2P47893 321 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLC35A2P78381 396 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 ADORA2A-AS1P86434 159 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 EMX1Q04741 257 aaPredicted RBP8.06□□□□□ -1.12
USP4-202ENST00000351842 ALKBH6Q3KRA9 238 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 STAC2Q6ZMT1 411 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLC16A12Q6ZSM3 486 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 MYPOPQ86VE0 399 aaPredicted RBP8.06□□□□□ -1.12
USP4-202ENST00000351842 ADPRHL1Q8NDY3 354 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 OR2AE1Q8NHA4 323 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 CHPT1Q8WUD6 406 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLAMF6Q96DU3 332 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 MAP6Q96JE9 813 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SIGLEC11Q96RL6 698 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 NELFAQ9H3P2 528 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 VSX1Q9NZR4 365 aaPredicted RBP8.06□□□□□ -1.12
USP4-202ENST00000351842 POU2F3Q9UKI9 436 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLC22A13Q9Y226 551 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms