RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PRAF2O60831 178 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 IGFBP3P17936 291 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-201ENST00000343916 HTR2CP28335 458 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 EXOSC2Q13868 293 aaKnown RBP17.27■□□□□ 0.36
COL9A3-201ENST00000343916 GLT8D1Q68CQ7 371 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 OR10K2Q6IF99 312 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 IDO2Q6ZQW0 420 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 GPAT4Q86UL3 456 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 DEFB123Q8N688 67 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 RNF138Q8WVD3 245 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 ALKBH4Q9NXW9 302 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 ADAMTS9Q9P2N4 1935 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 B8ZZF3 427 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 P2RY10O00398 339 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 MPC2O95563 127 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 DNASE1L1P49184 302 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 SNTA1Q13424 505 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 PCK2Q16822 640 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 PRAMEF20Q5VT98 475 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 GLRX5Q86SX6 157 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.27■□□□□ 0.35
COL9A3-201ENST00000343916 JAGN1Q8N5M9 183 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 C11orf40Q8WZ69 217 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 ZMAT3Q9HA38 289 aaKnown RBP17.27■□□□□ 0.35
COL9A3-201ENST00000343916 NPDC1Q9NQX5 325 aaPredicted RBP17.27■□□□□ 0.35
COL9A3-201ENST00000343916 SCP2D1Q9UJQ7 156 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 B3GALT5Q9Y2C3 310 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 CNTRLQ7Z7A1 2325 aa17.27■□□□□ 0.35
COL9A3-201ENST00000343916 PHF3Q92576 2039 aaKnown RBP17.27■□□□□ 0.35
COL9A3-201ENST00000343916 CELA2AP08217 269 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 H2BFMP0C1H6 154 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 M6PRP20645 277 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 COMMD7Q86VX2 200 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 WDR89Q96FK6 387 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-201ENST00000343916 MRGPRX4Q96LA9 322 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 SORCS2Q96PQ0 1159 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 RASL10BQ96S79 203 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 MGAT4CQ9UBM8 478 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 NPTNQ9Y639 398 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 ZNF814B7Z6K7 855 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 CFIP05156 583 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 GTF2F2P13984 249 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 ZNF28P17035 718 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 NAGAP17050 411 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 CSRP2Q16527 193 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 ZNF627Q7L945 461 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 MEIOBQ8N635 442 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 GINS4Q9BRT9 223 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 GAREM1Q9H706 876 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 EMC3Q9P0I2 261 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 PILRBQ9UKJ0 227 aa17.26■□□□□ 0.35
COL9A3-201ENST00000343916 RPH3AQ9Y2J0 694 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-201ENST00000343916 AQP8O94778 261 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 CD3DP04234 171 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 KLK2P20151 261 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 PRSS3P35030 304 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 SFTPDP35247 375 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 PMS2CLQ68D20 193 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 SPERTQ8NA61 448 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 MAFAQ8NHW3 353 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-201ENST00000343916 OR5B2Q96R09 309 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 DEFB126Q9BYW3 111 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 AUP1Q9Y679 476 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 A0A1W2PPL8 197 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 RPS10-NUDT3A0A1W2PQS6 291 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 CFDP00746 253 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-201ENST00000343916 VSIG10L2P0DP72 767 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 FSTP19883 344 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 DLX5P56178 289 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 CARD17Q5XLA6 110 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 OR51S1Q8NGJ8 323 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 RNF133Q8WVZ7 376 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 POTEKPQ9BYX7 375 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 CLEC4MQ9H2X3 399 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-201ENST00000343916 SDK2Q58EX2 2172 aa17.25■□□□□ 0.35
COL9A3-201ENST00000343916 ETV2O00321 342 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 RAMP1O60894 148 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 PDGFBP01127 241 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 RLN1P04808 185 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 CDAP32320 146 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 MFAP5Q13361 173 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 RBMS2Q15434 407 aaKnown RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 CDH24Q86UP0 819 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 OR10S1Q8NGN2 331 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 SLAMF6Q96DU3 332 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 SPACA9Q96E40 222 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 SEC61A2Q9H9S3 476 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 SDHAF3Q9NRP4 125 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 NPIPB13A6NJU9 1138 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 NPIPB4C9JG80 1138 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 CREBL2O60519 120 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 CSF1P09603 554 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 PRKACBP22694 351 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 FAUP35544 74 aaKnown RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 UBE2MP61081 183 aaKnown RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 MOGAT2Q3SYC2 334 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 ZNF626Q68DY1 528 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 MRPL14Q6P1L8 145 aaKnown RBP17.24■□□□□ 0.35
COL9A3-201ENST00000343916 C3orf33Q6P1S2 294 aa17.24■□□□□ 0.35
COL9A3-201ENST00000343916 WDSUB1Q8N9V3 476 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms