RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TOR3AQ9H497 397 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 NHEJ1Q9H9Q4 299 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ABCB10Q9NRK6 738 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CATSPERZQ9NTU4 200 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 TREM2Q9NZC2 230 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CALML5Q9NZT1 146 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 C6orf203Q9P0P8 240 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ERVK-18Q9QC07 812 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 DSCAML1Q8TD84 2053 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MXRA5Q9NR99 2828 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MUC3AQ02505 3323 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TRAV26-1A0A087WT03 109 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 C15orf38-AP3S2A0A0A6YYH1 394 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MAGEA13PA6NCF6 341 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 PRSS29PA6NIE9 313 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF850A8MQ14 1090 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 INS-IGF2F8WCM5 200 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 DNALI1O14645 258 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 LANCL1O43813 399 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ZBTB14O43829 449 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 KERAO60938 352 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 PDE9AO76083 593 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 NPPAP01160 153 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HLA-AP01891 365 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 POLBP06746 335 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TROVE2P10155 538 aaKnown RBP eCLIP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CCL2P13500 99 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 DRD4P21917 467 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 PSMA2P25787 234 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 RPL5P46777 297 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 SOX2P48431 317 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CARD18P57730 90 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ISL1P61371 349 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TBPL1P62380 186 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HSF1Q00613 529 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 OC90Q02509 493 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 UBXN1Q04323 297 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 BLMHQ13867 455 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 KLF5Q13887 457 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HIST2H2ACQ16777 129 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TMEM177Q53S58 311 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 RNASEH2BQ5TBB1 312 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 GRTP1Q5TC63 336 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HIST2H2AA3Q6FI13 130 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 NPSR1Q6W5P4 371 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 DPY19L2P2Q6ZN68 376 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF788Q6ZQV5 615 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 C22orf34Q6ZV56 151 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CREB3L2Q70SY1 520 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CIR1Q86X95 450 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 PLD3Q8IV08 490 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 PPIL6Q8IXY8 311 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CFAP206Q8IYR0 622 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 OR9K2Q8NGE7 335 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 OR5L1Q8NGL2 311 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 OR11L1Q8NGX0 322 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 JOSD2Q8TAC2 188 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FAM136AQ96C01 138 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 COQ8BQ96D53 544 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF347Q96SE7 839 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 GPR22Q99680 433 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CPNE1Q99829 537 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 OR8D2Q9GZM6 311 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 DEFB127Q9H1M4 99 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 SUDS3Q9H7L9 328 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 NOL11Q9H8H0 719 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 GPR35Q9HC97 309 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FAM212BQ9NTI7 297 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 P2RX2Q9UBL9 471 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HEY2Q9UBP5 337 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MRPS16Q9Y3D3 137 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 LRRC42Q9Y546 428 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CLCA3PQ9Y6N3 262 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MKI67P46013 3256 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 VCANP13611 3396 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CFAP47Q6ZTR5 3102 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HRNRQ86YZ3 2850 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 SEC16AO15027 2179 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 A0A0J9YW62 118 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ATP6AP2A0A1C7CYW4 349 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MACROD2A1Z1Q3 448 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FAM90A7PA6NKC0 464 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FAM223BA6NKX1 122 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 DUXAA6NLW8 204 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FAM90A23PA8MXZ1 464 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HNRNPCL2B2RXH8 293 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 B4DXG7 233 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 M0QX08 132 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 HNRNPCL1O60812 293 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 EEDO75530 441 aaKnown RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 LYPLA1O75608 230 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 ATP6AP2O75787 350 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 H6PDO95479 791 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 CELA3AP09093 270 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 UBTFL6P0CB48 400 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TFPIP10646 304 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 IFNGR1P15260 489 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 TAC1P20366 129 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 FUT3P21217 361 aa1.16□□□□□ -2.22
LINC00643-201ENST00000334389 MC4RP32245 332 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms