RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DUSP13Q9UII6 198 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 FBXO9Q9UK97 447 aaPredicted RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 IGLV3-9A0A075B6K5 115 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SGCEO43556 437 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 LCKP06239 509 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 GSTM3P21266 225 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 CALRP27797 417 aaKnown RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 ALDH3B1P43353 468 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 DSCR9P59020 149 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 KRTAP1-1Q07627 177 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SCRN3Q0VDG4 424 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 MAD2L1BPQ15013 274 aaPredicted RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 DNM1P34Q6PK57 102 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 VASH1Q7L8A9 365 aaPredicted RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 HS3ST5Q8IZT8 346 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 LNX2Q8N448 690 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SLC26A10Q8NG04 563 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 OR1J1Q8NGS3 322 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 C10orf105Q8TEF2 133 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 FAM168AQ92567 244 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 EME1Q96AY2 570 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 MRPS26Q9BYN8 205 aaKnown RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 RACGAP1Q9H0H5 632 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 DYNLRB1Q9NP97 96 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 TBC1D23Q9NUY8 699 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 REV1Q9UBZ9 1251 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 FKBP7Q9Y680 259 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 LHFPL6Q9Y693 200 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 NIPBLQ6KC79 2804 aaeCLIP13.56□□□□□ -0.24
CLN3-201ENST00000333496 ARRDC5A6NEK1 342 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 FAM171A2A8MVW0 826 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 M0R233 179 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 GNGT2O14610 69 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 DOK2O60496 412 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 ICMTO60725 284 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 NGFP01138 241 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 TFP02787 698 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 COX5BP10606 129 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 CENPAP49450 140 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 ATP6AP1Q15904 470 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 CCDC92Q53HC0 331 aaPredicted RBP13.56□□□□□ -0.24
CLN3-201ENST00000333496 TMEM255AQ5JRV8 349 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 RFPL4BQ6ZWI9 263 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 CYB561A3Q8NBI2 242 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 SYNPRQ8TBG9 265 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 ZNRF4Q8WWF5 429 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 CENPNQ96H22 339 aaPredicted RBP13.56□□□□□ -0.24
CLN3-201ENST00000333496 TPK1Q9H3S4 243 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 NTN4Q9HB63 628 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 PLEK2Q9NYT0 353 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 PDP1Q9P0J1 537 aaPredicted RBP13.56□□□□□ -0.24
CLN3-201ENST00000333496 TLN2Q9Y4G6 2542 aa13.56□□□□□ -0.24
CLN3-201ENST00000333496 ANK3Q12955 4377 aaKnown RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 SETD2Q9BYW2 2564 aaPredicted RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 RER1O15258 196 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 HEXAP06865 529 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 HIST1H3AP68431 136 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 COX10Q12887 443 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 HIST2H3PS2Q5TEC6 136 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 HIST2H3AQ71DI3 136 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 SLC37A3Q8NCC5 494 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 NEU4Q8WWR8 484 aaPredicted RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 SLC7A6Q92536 515 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 MARS2Q96GW9 593 aaKnown RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 C4orf45Q96LM5 186 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 VCX3AQ9NNX9 186 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 C8orf4Q9NR00 106 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 MRPL22Q9NWU5 206 aaKnown RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 DNAJB9Q9UBS3 223 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 NDRG4Q9ULP0 352 aaKnown RBP13.55□□□□□ -0.24
CLN3-201ENST00000333496 COMMD3-BMI1R4GMX3 469 aa13.55□□□□□ -0.24
CLN3-201ENST00000333496 OR6C6A6NF89 314 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 VWC2LB2RUY7 222 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 DEAF1O75398 565 aaPredicted RBP13.54□□□□□ -0.24
CLN3-201ENST00000333496 CSF3P09919 207 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 SMIM18P0DKX4 95 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 NAT2P11245 290 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 PRKACGP22612 351 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 HTR5AP47898 357 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 KLF3P57682 345 aaPredicted RBP13.54□□□□□ -0.24
CLN3-201ENST00000333496 GLO1Q04760 184 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 CNPY1Q3B7I2 92 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 ALKBH6Q3KRA9 238 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 SLC36A3Q495N2 470 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 SPATA46Q5T0L3 261 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 CORO6Q6QEF8 472 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 PACRGLQ8N7B6 248 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 OR2T33Q8NG76 320 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 SLC25A40Q8TBP6 338 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 RBM4Q9BWF3 364 aaKnown RBP13.54□□□□□ -0.24
CLN3-201ENST00000333496 OR2J1Q9GZK6 312 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 MS4A5Q9H3V2 200 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 TAAR3PQ9P1P4 343 aa13.54□□□□□ -0.24
CLN3-201ENST00000333496 EIF3KQ9UBQ5 218 aaKnown RBP13.54□□□□□ -0.24
CLN3-201ENST00000333496 E2F6O75461 281 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 PYCR1P32322 319 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 MPV17P39210 176 aa13.53□□□□□ -0.24
CLN3-201ENST00000333496 RPL5P46777 297 aaKnown RBP13.53□□□□□ -0.24
CLN3-201ENST00000333496 PDLIM4P50479 330 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms