RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SLC17A5Q9NRA2 495 aa13.34□□□□□ -0.27
TCOF1-201ENST00000323668 CTAG2O75638 210 aa13.34□□□□□ -0.27
TCOF1-201ENST00000323668 AQP8O94778 261 aa13.34□□□□□ -0.27
TCOF1-201ENST00000323668 SNRNP70P08621 437 aaKnown RBP13.34□□□□□ -0.27
TCOF1-201ENST00000323668 CPT2P23786 658 aa13.34□□□□□ -0.27
TCOF1-201ENST00000323668 SERPINF1P36955 418 aa13.34□□□□□ -0.27
TCOF1-201ENST00000323668 MEX3BQ6ZN04 569 aaKnown RBP13.34□□□□□ -0.27
TCOF1-201ENST00000323668 CMSS1Q9BQ75 279 aaKnown RBP13.34□□□□□ -0.27
TCOF1-201ENST00000323668 FAM212BQ9NTI7 297 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-201ENST00000323668 SEMA7AO75326 666 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 PTP4A3O75365 173 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 BPNT1O95861 308 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 APOBEC1P41238 236 aaKnown RBP13.33□□□□□ -0.27
TCOF1-201ENST00000323668 SNRPNP63162 240 aaKnown RBP13.33□□□□□ -0.27
TCOF1-201ENST00000323668 COMTD1Q86VU5 262 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 TMED6Q8WW62 240 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 MRM2Q9UI43 246 aaKnown RBP13.33□□□□□ -0.27
TCOF1-201ENST00000323668 ST6GALNAC2Q9UJ37 374 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 DOCK4Q8N1I0 1966 aa13.33□□□□□ -0.27
TCOF1-201ENST00000323668 HMSDA8MTL9 139 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 PRTGQ2VWP7 1150 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 FAM209AQ5JX71 171 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 LYG2Q86SG7 212 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 MRGPREQ86SM8 312 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 MOGAT1Q96PD6 335 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 ULBP2Q9BZM5 246 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 FRG2CA6NGY1 282 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 GJE1A6NN92 205 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 ALOX5APP20292 161 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 THBS2P35442 1172 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 MTCP1P56278 107 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 PAN3Q58A45 887 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 OR1J2Q8NGS2 313 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 HGDQ93099 445 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 TCEAL2Q9H3H9 227 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 WIF1Q9Y5W5 379 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 TMEM229AB2RXF0 380 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 HOXC4P09017 264 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 PEBP1P30086 187 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 CSNK1EP49674 416 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 UBE2IP63279 158 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 CAMK2BQ13554 666 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 EXOSC6Q5RKV6 272 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 ZNF695Q8IW36 515 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 APOBEC4Q8WW27 367 aaKnown RBP13.33□□□□□ -0.28
TCOF1-201ENST00000323668 TCTEX1D2Q8WW35 142 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 TAAR8Q969N4 342 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 CHST11Q9NPF2 352 aa13.33□□□□□ -0.28
TCOF1-201ENST00000323668 A0A1B0GX78 115 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 EML2O95834 649 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 HRH1P35367 487 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 PNLIPRP2P54317 469 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CLDN17P56750 224 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 BAP18Q8IXM2 172 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 PRSS35Q8N3Z0 413 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 OR51E1Q8TCB6 317 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 ALKBH4Q9NXW9 302 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 IGHV3-20A0A0C4DH32 117 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CYR61O00622 381 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 P04436 131 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CNN3Q15417 329 aaKnown RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MPPED2Q15777 294 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 AKR1C8PQ5T2L2 129 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CBLN3Q6UW01 205 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 GALNT16Q8N428 558 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MRPL38Q96DV4 380 aaKnown RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 C10orf90Q96M02 699 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 SPACA5Q96QH8 159 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 METTL9Q9H1A3 318 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MED29Q9NX70 200 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 SPTY2D1-AS1A0A0U1RR47 76 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 SSX5O60225 188 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 TBPP20226 339 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CX3CR1P49238 355 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MFGE8Q08431 387 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 SFRP5Q5T4F7 317 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 ANKRD9Q96BM1 317 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 PLA2G2FQ9BZM2 168 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 ZNF223Q9UK11 482 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 PCDHGA9Q9Y5G4 932 aaKnown RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MGAMO43451 1857 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 CABIN1Q9Y6J0 2220 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 GFERP55789 205 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MFAP5Q13361 173 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 TMEM200AQ86VY9 491 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 OR4S1Q8NGB4 309 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 OR14L1PQ8NHC6 308 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 RNF128Q8TEB7 428 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 MVB12AQ96EY5 273 aa13.32□□□□□ -0.28
TCOF1-201ENST00000323668 NKX3-1Q99801 234 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 RPP25Q9BUL9 199 aaKnown RBP13.32□□□□□ -0.28
TCOF1-201ENST00000323668 PIGBOS1A0A0B4J2F0 54 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 TBXA2RP21731 343 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 CCR5P51681 352 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 FLI1Q01543 452 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-201ENST00000323668 ISXQ2M1V0 245 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 C14orf28Q4W4Y0 310 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 C11orf87Q6NUJ2 197 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 TRILQ7L0X0 811 aa13.31□□□□□ -0.28
TCOF1-201ENST00000323668 EXD3Q8N9H8 876 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms