RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 VPS13CQ709C8 3753 aa15.25■□□□□ 0.03
PHGDH-234ENST00000642041 TRAV17A0A0B4J275 112 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 C17orf51A8MQB3 221 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 B4DXG7 233 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 CASKO14936 926 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 PLGP00747 810 aaPredicted RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 CRYABP02511 175 aaKnown RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 APOC1P02654 83 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 ETV6P41212 452 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 NAA10P41227 235 aaPredicted RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 RIDAP52758 137 aaKnown RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 SUCLG1P53597 346 aaKnown RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 B3GALT5-AS1P59052 145 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 LSM6P62312 80 aaKnown RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 ADAM8P78325 824 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 PLGLB1Q02325 96 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 SLC10A1Q14973 349 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 HIST3H3Q16695 136 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 SPANXN2Q5MJ10 180 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 HBMQ6B0K9 141 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF227Q86WZ6 799 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 YIPF7Q8N8F6 280 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 OR51L1Q8NGJ5 315 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 THEM6Q8WUY1 208 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 OR8B4Q96RC9 309 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 ISG20L2Q9H9L3 353 aaKnown RBP15.24■□□□□ 0.03
PHGDH-234ENST00000642041 GP6Q9HCN6 339 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 PLA2G3Q9NZ20 509 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 B3GAT1Q9P2W7 334 aa15.24■□□□□ 0.03
PHGDH-234ENST00000642041 FN1P02751 2386 aaKnown RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 A0A1W2PNR3 127 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 LRRC3CA6NJW4 275 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 LOC110117498-PIK3R3F6TDL0 507 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 TRAF3IP2O43734 574 aaPredicted RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SELENOFO60613 162 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 F10P00742 488 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 INHBBP09529 407 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 PGA4P0DJD7 388 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 PGA3P0DJD8 388 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 NPR2P20594 1047 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 EDNRAP25101 427 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 GDI2P50395 445 aaKnown RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 TNFSF10P50591 281 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF84P51523 738 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 PPP5CP53041 499 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 GFRA1P56159 465 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 FABP5Q01469 135 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ALKBH1Q13686 389 aaKnown RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SPINK14Q6IE38 97 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ARL9Q6T311 187 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 B3GLCTQ6Y288 498 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 CREB3L2Q70SY1 520 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 CHMP1BQ7LBR1 199 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 DPY19L4Q7Z388 723 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 KRT77Q7Z794 578 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 BIVMQ86UB2 503 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 GPAT4Q86UL3 456 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SULF2Q8IWU5 870 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 FAM109AQ8N4B1 249 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF511Q8NB15 262 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SLC26A10Q8NG04 563 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 OR2AJ1Q8NGZ0 328 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 NSMAFQ92636 917 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 GHSRQ92847 366 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 NINJ1Q92982 152 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 CMTM3Q96MX0 182 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 WDFY2Q96P53 400 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SIGLEC12Q96PQ1 595 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 TIMP4Q99727 224 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 C1orf198Q9H425 327 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF703Q9H7S9 590 aaPredicted RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 EMC3Q9P0I2 261 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 ST6GALNAC2Q9UJ37 374 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 TINAGQ9UJW2 476 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 IKZF2Q9UKS7 526 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 MEMO1Q9Y316 297 aa15.23■□□□□ 0.03
PHGDH-234ENST00000642041 INTS1Q8N201 2190 aaKnown RBP15.23■□□□□ 0.03
PHGDH-234ENST00000642041 SLC35F4A4IF30 521 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 ACOD1A6NK06 481 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 GLSO94925 669 aaPredicted RBP15.22■□□□□ 0.03
PHGDH-234ENST00000642041 CDRT1O95170 752 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 SYNGR4O95473 234 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 CTLA4P16410 223 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF12P17014 697 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 IL11P20809 199 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 BMXP51813 675 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 RPS25P62851 125 aaKnown RBP15.22■□□□□ 0.03
PHGDH-234ENST00000642041 SLC17A1Q14916 467 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 SF3B4Q15427 424 aaKnown RBP eCLIP15.22■□□□□ 0.033e-16■■■■■ 41.5
PHGDH-234ENST00000642041 NRN1LQ496H8 165 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 ZNF766Q5HY98 468 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 C10orf128Q5T292 105 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 RIPPLY2Q5TAB7 128 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 DDI2Q5TDH0 399 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 LIPNQ5VXI9 398 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 VASNQ6EMK4 673 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 C22orf42Q6IC83 251 aa15.22■□□□□ 0.03
PHGDH-234ENST00000642041 METAP1DQ6UB28 335 aaPredicted RBP15.22■□□□□ 0.03
PHGDH-234ENST00000642041 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.22■□□□□ 0.03
PHGDH-234ENST00000642041 MINDY2Q8NBR6 621 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms