RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ZNF735P0CB33 412 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 C9orf50Q5SZB4 431 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 MARCH3Q86UD3 253 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF721Q8TF20 911 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 PTX4Q96A99 478 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 GPN3Q9UHW5 284 aaPredicted RBP18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 MMP17Q9ULZ9 603 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 HHLA2Q9UM44 414 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 ALPK2Q86TB3 2170 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 EPOPA6NHQ4 379 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 NPIPB7O75200 414 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 DDAH2O95865 285 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 PMPCAQ10713 525 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF345Q14585 488 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 NR0B2Q15466 257 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 ATRAIDQ6UW56 229 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR1J2Q8NGS2 313 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 PDE7BQ9NP56 450 aa18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 CGGBP1Q9UFW8 167 aaPredicted RBP18.07■□□□□ 0.48
SYNGAP1-227ENST00000638142 TDRD6O60522 2096 aaKnown RBP18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 DNASE2O00115 360 aaPredicted RBP18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 NUDT21O43809 227 aaKnown RBP18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 APOC3P02656 99 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 ATXN8OSP0DMR3 200 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 DNASE1L1P49184 302 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 POLR2HP52434 150 aaKnown RBP18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 GLO1Q04760 184 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 DHRS2Q13268 280 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF169Q14929 603 aaPredicted RBP18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 BPIFB2Q8N4F0 458 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 TSLPQ969D9 159 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF416Q9BWM5 594 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 TBL1XR1Q9BZK7 514 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 UCK1Q9HA47 277 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 RASL12Q9NYN1 266 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 R4GMQ9 66 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 IGKV3D-11A0A0A0MRZ8 115 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR5H14A6NHG9 310 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 CRABP1P29762 137 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 CD96P40200 585 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 CAPZA1P52907 286 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 LIN54Q6MZP7 749 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 KCNRGQ8N5I3 272 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 CMKLR1Q99788 373 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 MSRAQ9UJ68 235 aa18.06■□□□□ 0.48
SYNGAP1-227ENST00000638142 TMED7-TICAM2A0A0A6YYA0 188 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 LILRA5A6NI73 299 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 TMEM200CA6NKL6 621 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 MPTX1A8MV57 137 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 A8MVM7 634 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 TSPAN2O60636 221 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 ALOX12BO75342 701 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 SRSF10O75494 262 aaKnown RBP18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR2F2O95006 317 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 RAB3AP20336 220 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 ACHEP22303 614 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 CD34P28906 385 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR2F1Q13607 317 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 MEF2DQ14814 521 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 EBPQ15125 230 aaKnown RBP18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 C1orf100Q5SVJ3 147 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR13C3Q8NGS6 347 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 KLHDC7BQ96G42 594 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 PCDHB16Q9NRJ7 776 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 CYB5R1Q9UHQ9 305 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 TMED7Q9Y3B3 224 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 LOC390937A0A1W2PQ73 354 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 DCDC2BA2VCK2 349 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 C17orf51A8MQB3 221 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 ISG15P05161 165 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 SLC25A4P12235 298 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 ELAVL1Q15717 326 aaKnown RBP18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 C1orf140Q5VVS0 124 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 HLA-DQA1Q5Y7H0 255 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 MDGA2Q7Z553 956 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 JAGN1Q8N5M9 183 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 NKAIN3Q8N8D7 197 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 CLRN3Q8NCR9 226 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR51A2Q8NGJ7 313 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 GAL3ST1Q99999 423 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 NUDT9Q9BW91 350 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 NRSN2Q9GZP1 204 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 SLC2A8Q9NY64 477 aa18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF230Q9UIE0 474 aaPredicted RBP18.05■□□□□ 0.48
SYNGAP1-227ENST00000638142 IGHV5-51A0A0C4DH38 117 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 KANTRA0A1W2PQU2 76 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 TLCD2A6NGC4 264 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 DISC1C4P0D8 188 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 PLPP3O14495 311 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 ABCD4O14678 606 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 TO15178 435 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 IGLV3-19P01714 112 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 MAOBP27338 520 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 PAPD4Q6PIY7 484 aaKnown RBP18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 ZNF584Q8IVC4 421 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 RELL2Q8NC24 303 aaPredicted RBP18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 OR13C8Q8NGS7 320 aa18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 MRPL38Q96DV4 380 aaKnown RBP18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.04■□□□□ 0.48
SYNGAP1-227ENST00000638142 CHRNA10Q9GZZ6 450 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms