RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MEIS3P2A8K0S8 358 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 C21orf140B9A014 251 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 COX7A2P2O60397 106 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 B3GALNT1O75752 331 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SBK2P0C263 348 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 GLYR1Q49A26 553 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 BCL7AQ4VC05 210 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 EMC4Q5J8M3 183 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 RPL7L1Q6DKI1 246 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 C6orf89Q6UWU4 347 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR51A4Q8NGJ6 313 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR2V1Q8NHB1 315 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ZCCHC14Q8WYQ9 949 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CACNG6Q9BXT2 260 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CNTNAP3Q9BZ76 1288 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 S1PR5Q9H228 398 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 HRH3Q9Y5N1 445 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CABIN1Q9Y6J0 2220 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ARAP2Q8WZ64 1704 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ABLIM3O94929 683 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 HLA-DMAP28067 261 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 BCL6P41182 706 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 LIM2P55344 173 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 GSG1Q2KHT4 349 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CARFQ8N187 725 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ADIPOR1Q96A54 375 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 FBXL4Q9UKA2 621 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 NPTNQ9Y639 398 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 IGHV3-20A0A0C4DH32 117 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TERTO14746 1132 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PF4P02776 101 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 HOXB5P09067 269 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TRHRP34981 398 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF273Q14593 569 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PROX2Q3B8N5 592 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CPZQ66K79 652 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 LETMD1Q6P1Q0 360 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 NPEPL1Q8NDH3 523 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SMAP2Q8WU79 429 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PPP1R3CQ9UQK1 317 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TJP1Q07157 1748 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TRBV23-1A0A0A0MS06 115 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 A0A1B0GUH1 482 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TOXO94900 526 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 QDPRP09417 244 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 NAGAP17050 411 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SDC1P18827 310 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 KIR2DS2P43631 304 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 AMTP48728 403 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PLAURQ03405 335 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 COL9A3Q14050 684 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR8G2PQ6IF36 304 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 NPWQ8N729 165 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 RBM14Q96PK6 669 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CCL19Q99731 98 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TP63Q9H3D4 680 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 RAB22AQ9UL26 194 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 METTL12A8MUP2 240 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 F8W036 122 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DFFBO76075 338 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 GYPBP06028 91 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 RAB6AP20340 208 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OPCMLQ14982 345 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SLC35D3Q5M8T2 416 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TRAT1Q6PIZ9 186 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 MBOAT2Q6ZWT7 520 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DCXRQ7Z4W1 244 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF546Q86UE3 836 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FBXO27Q8NI29 283 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM163Q8TC26 289 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PDXPQ96GD0 296 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 CIB3Q96Q77 187 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 C20orf24Q9BUV8 137 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SEMA4GQ9NTN9 838 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 C1orf196B1AJZ1 125 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF195O14628 629 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FURINP09958 794 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ARAFP10398 606 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DRD5P21918 477 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 EPHA2P29317 976 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 RAB1AP62820 205 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TNFAIP6P98066 277 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SCD5Q86SK9 330 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ELP4Q96EB1 424 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SIGLEC10Q96LC7 697 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DOCK7Q96N67 2140 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM147Q9BVK8 224 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR51I2Q9H344 312 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF331Q9NQX6 463 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SLC23A1Q9UHI7 598 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SALL4Q9UJQ4 1053 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PIKFYVEQ9Y2I7 2098 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TRAV38-1A0A0B4J264 116 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 MEIS3P1A6NDR6 274 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FOLR1P15328 257 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PGGHGQ32M88 737 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 C18orf21Q32NC0 220 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PYCR3Q53H96 274 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SSX9Q7RTT3 188 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms