RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IGSF6O95976 241 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 UMODP07911 640 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ALPPL2P10696 532 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SLC6A11P48066 632 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 INSL4Q14641 139 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ARSGQ96EG1 525 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SLC41A2Q96JW4 573 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 LRFN3Q9BTN0 628 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SMIM3Q9BZL3 60 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 IL21RQ9HBE5 538 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PKD1L3Q7Z443 1732 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV34A0A0B4J273 112 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF727A8MUV8 499 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 B4DEV8 164 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF736B4DX44 427 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 H7C417 338 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 AMBPP02760 352 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OR5H8P0DN80 308 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ATF1P18846 271 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 EPORP19235 508 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 XCR1P46094 333 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TAS2R20P59543 309 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 IL10RAQ13651 578 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FRRS1Q6ZNA5 592 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OVCH1Q7RTY7 1134 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OR4K5Q8NGD3 323 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OR52L2PQ8NGH6 319 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 THAP4Q8WY91 577 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 IL22RA2Q969J5 263 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 MOB3AQ96BX8 217 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TIFAQ96CG3 184 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 NTNG2Q96CW9 530 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SDSLQ96GA7 329 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 MRGPRX1Q96LB2 322 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRRX2Q99811 253 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CITED1Q99966 193 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SPHK2Q9NRA0 654 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TBX21Q9UL17 535 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 LAMP3Q9UQV4 416 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FAM230AA0A1W2PPH8 454 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CDHR4A6H8M9 788 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 RIIAD1A6NNX1 92 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 YDJCA8MPS7 323 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF724A8MTY0 619 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 H3BQ15 152 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 H7BYZ3 331 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 M0QZ24 198 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 VAMP5O95183 116 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CST4P01036 141 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ITGB2P05107 769 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LIMS3P0CW19 117 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LIMS4P0CW20 117 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 NR2F1P10589 423 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 FPR2P25090 351 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CD1BP29016 333 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TNFSF9P41273 254 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZFP36L2P47974 494 aaKnown RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SULT1A2P50226 295 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LBX1P52954 281 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CRYBB1P53674 252 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SYPL1Q16563 259 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 REEP3Q6NUK4 255 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ANKRD16Q6P6B7 361 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM220Q6QAJ8 160 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 KIRREL2Q6UWL6 708 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ABHD15Q6UXT9 468 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM150AQ86TG1 271 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMPRSS12Q86WS5 348 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LAS2Q8IYD9 372 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CLECL1Q8IZS7 167 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TCTEX1D1Q8N7M0 179 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR4C15Q8NGM1 316 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR2T27Q8NH04 317 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR5K2Q8NHB8 316 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM37Q8WXS4 190 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 FOXN4Q96NZ1 517 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ANGPTL4Q9BY76 406 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CST9LQ9H4G1 147 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 PLEKHA2Q9HB19 425 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 NRIP3Q9NQ35 241 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 INPP5EQ9NRR6 644 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 UQCR10Q9UDW1 63 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV30A0A087WSZ9 112 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 A0A087WV62 115 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 BLACEA4D250 179 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 MEIS3P1A6NDR6 274 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LOC730098B7Z3J9 87 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TBX18O95935 607 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CD5P06127 495 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ASGR2P07307 311 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR4A8P0C604 315 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TFPIP10646 304 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 HOXA11P31270 313 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 APOBEC3AP31941 199 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CX3CR1P49238 355 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 YBEYP58557 167 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TRA2BP62995 288 aaKnown RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 MC1RQ01726 317 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM241Q24JQ0 296 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SOWAHAQ2M3V2 549 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms