RNA–Protein interactions for RNA: ENST00000637329.1

CLN6-219, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,204 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-219ENST00000637329 AMELYQ99218 206 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 TSC22D3Q99576 134 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 CENPOQ9BU64 300 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 NIPAL2Q9H841 368 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 CALHM2Q9HA72 323 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 CRLF2Q9HC73 371 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 GPR35Q9HC97 309 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 EXOSC4Q9NPD3 245 aaKnown RBP13.54□□□□□ -0.24
CLN6-219ENST00000637329 TMEM38BQ9NVV0 291 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 SLCO1C1Q9NYB5 712 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 GSTK1Q9Y2Q3 226 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 GRIP1Q9Y3R0 1128 aa13.54□□□□□ -0.24
CLN6-219ENST00000637329 SIRT4Q9Y6E7 314 aaPredicted RBP13.54□□□□□ -0.24
CLN6-219ENST00000637329 TRBV2A0A0J9YWF9 115 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 CD8B2A6NJW9 211 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 WDR1O75083 606 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 TGM6O95932 706 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 CDAP32320 146 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 OPRL1P41146 370 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 CCR9P51686 369 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 LSM3P62310 102 aaKnown RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 GUSBP1Q15486 140 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 EIF2S3LQ2VIR3 472 aaKnown RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 FAM27BQ5VT28 67 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 PAMR1Q6UXH9 720 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 LRRN1Q6UXK5 716 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 RPTNQ6XPR3 784 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 ZNF627Q7L945 461 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 LINC00346Q8IVM7 164 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 Q8NA96 180 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 DYNC2LI1Q8TCX1 351 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 THRSPQ92748 146 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 SLAMF6Q96DU3 332 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 FOXB1Q99853 325 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 DCUN1D5Q9BTE7 237 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 TMED9Q9BVK6 235 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 RBM24Q9BX46 236 aaKnown RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 DCSTAMPQ9H295 470 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 MOB1AQ9H8S9 216 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 EMC7Q9NPA0 242 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 TXNL4BQ9NX01 149 aaKnown RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 CCDC59Q9P031 241 aaKnown RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 ASH2LQ9UBL3 628 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 GDF2Q9UK05 429 aaPredicted RBP13.53□□□□□ -0.24
CLN6-219ENST00000637329 LRP12Q9Y561 859 aa13.53□□□□□ -0.24
CLN6-219ENST00000637329 FIGNL2A6NMB9 653 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 TMEM212A6NML5 194 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ZNF587BE7ETH6 402 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 GABRPO00591 440 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 MAGEB4O15481 346 aaPredicted RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 SC5DO75845 299 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 KRT33AO76009 404 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 CST2P09228 141 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 SERPINB10P48595 397 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 HIST1H3AP68431 136 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 FABP5Q01469 135 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ROR2Q01974 943 aaKnown RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 SRSF1Q07955 248 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLN6-219ENST00000637329 ALKBH1Q13686 389 aaKnown RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 CEACAM16Q2WEN9 425 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ZNF829Q3KNS6 432 aaPredicted RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 LINC00303Q3SY05 128 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 YIF1BQ5BJH7 314 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 HIST2H3PS2Q5TEC6 136 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 TSPO2Q5TGU0 170 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 NSUN5P2Q63ZY6 315 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 HIST2H3AQ71DI3 136 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 FGD2Q7Z6J4 655 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 SYT9Q86SS6 491 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 PHYHIPQ92561 330 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 GHSRQ92847 366 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 RNF166Q96A37 237 aaPredicted RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 ZNF775Q96BV0 537 aaPredicted RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 TRMT61AQ96FX7 289 aaKnown RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 MAP6Q96JE9 813 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 C4orf45Q96LM5 186 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 KCTD7Q96MP8 289 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 TRIB1Q96RU8 372 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 TM9SF2Q99805 663 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 MED18Q9BUE0 208 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ZNF416Q9BWM5 594 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 COMMD4Q9H0A8 199 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ELOVL3Q9HB03 270 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 DDX28Q9NUL7 540 aaKnown RBP13.52□□□□□ -0.25
CLN6-219ENST00000637329 MALT1Q9UDY8 824 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 EMC9Q9Y3B6 208 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 ATMQ13315 3056 aa13.52□□□□□ -0.25
CLN6-219ENST00000637329 COL6A6A6NMZ7 2263 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 PSMD9O00233 223 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 HOXD4P09016 255 aaPredicted RBP13.51□□□□□ -0.25
CLN6-219ENST00000637329 H2BFMP0C1H6 154 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 FAM87AP0C7U9 286 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 ZNF182P17025 639 aaPredicted RBP13.51□□□□□ -0.25
CLN6-219ENST00000637329 PSMB10P40306 273 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 OR3A2P47893 321 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 NANOS3P60323 173 aaKnown RBP13.51□□□□□ -0.25
CLN6-219ENST00000637329 GRB2P62993 217 aaKnown RBP13.51□□□□□ -0.25
CLN6-219ENST00000637329 SLC3A1Q07837 685 aa13.51□□□□□ -0.25
CLN6-219ENST00000637329 ENDOGQ14249 297 aaKnown RBP13.51□□□□□ -0.25
CLN6-219ENST00000637329 SGCAQ16586 387 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms