RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF740Q8NDX6 193 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 OR4K1Q8NGD4 311 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 OR9K2Q8NGE7 335 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 LINC01006Q8NI28 216 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 PNPT1Q8TCS8 783 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SPPL2AQ8TCT8 520 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SMPDL3AQ92484 453 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ANP32BQ92688 251 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 OSTF1Q92882 214 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 EMG1Q92979 244 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 LRRC39Q96DD0 335 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 MUCL1Q96DR8 90 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 TM4SF19Q96DZ7 209 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 FAM71F1Q96KD3 344 aaPredicted RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 EBNA1BP2Q99848 306 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 RAB1BQ9H0U4 201 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 GANQ9H2C0 597 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 KLHL31Q9H511 634 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SDF2L1Q9HCN8 221 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 PRTFDC1Q9NRG1 225 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 OPN4Q9UHM6 478 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 NUP50Q9UKX7 468 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 STK38LQ9Y2H1 464 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF175Q9Y473 711 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 DNAH10Q8IVF4 4471 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 KCNE1BA0A087WTH5 132 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GOLGA8QA0A0J9YX86 632 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 A0A1B0GVL5 298 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 A0A1W2PN81 502 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 PRR32B1ATL7 298 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 E9PQ18 207 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GOLGA8RI6L899 631 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 LCMT2O60294 686 aaKnown RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GPR137BO60478 399 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 BCAS1O75363 584 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 SERPIND1P05546 499 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 SLC35G6P0C7Q6 338 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 OR56A5P0C7T3 313 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GP9P14770 177 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 B4GALT1P15291 398 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 STX2P32856 288 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 CHRNA7P36544 502 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 HSD17B2P37059 387 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GRIA1P42261 906 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 SYKP43405 635 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GPR6P46095 362 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 RAB8AP61006 207 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 CDR2Q01850 454 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 MSLNQ13421 630 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 TAF1AQ15573 450 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 SLC1A5Q15758 541 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 UGT3A2Q3SY77 523 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GPR33Q49SQ1 333 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 ARMCX4Q5H9R4 360 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 CAPN13Q6MZZ7 669 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 KLC3Q6P597 504 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 BZW1Q7L1Q6 419 aaKnown RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 MON1BQ7L1V2 547 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF677Q86XU0 584 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 PHF13Q86YI8 300 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 OR4N5Q8IXE1 308 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 C9orf40Q8IXQ3 194 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 MCOLN2Q8IZK6 566 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GABRG1Q8N1C3 465 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 CA13Q8N1Q1 262 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 GPR137CQ8N3F9 429 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 NUBPLQ8TB37 319 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 LKAAEAR1Q8TD35 194 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 PHYHIPQ92561 330 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 RAB39BQ96DA2 213 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 LGALS12Q96DT0 336 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 TMEM43Q9BTV4 400 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 IQCGQ9H095 443 aaKnown RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 HAUS4Q9H6D7 363 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 MED20Q9H944 212 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 MEAF6Q9HAF1 191 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 PLEK2Q9NYT0 353 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 BCAP29Q9UHQ4 241 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 PSORS1C1Q9UIG5 152 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 N6AMT1Q9Y5N5 214 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 SOX21Q9Y651 276 aaPredicted RBP3.58□□□□□ -1.84
LINC00540-201ENST00000611481 ALMS1Q8TCU4 4167 aa3.58□□□□□ -1.84
LINC00540-201ENST00000611481 TRBV5-4A0A0C4DH59 114 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 MDFIC2A0A1B0GVS7 189 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 A0A1W2PP11 408 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 C15orf62A8K5M9 175 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 IQCF5A8MTL0 148 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PPIAL4DF5H284 164 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 H0YL77 283 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 M0R1B8 84 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 HSPA12AO43301 675 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 OR1I1O60431 355 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ZIC3O60481 467 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 FCMRO60667 390 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SS18L1O75177 396 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 MTRF1O75570 445 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 LYZL6O75951 148 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ETHE1O95571 254 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 YEATS4O95619 227 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 MBD3O95983 291 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms