RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 BAIAP2Q9UQB8 552 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 LHFPL6Q9Y693 200 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 HIVEP2P31629 2446 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 OR6C6A6NF89 314 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 VWC2LB2RUY7 222 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 H3BSA7 217 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 M0R233 179 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 LY6HO94772 140 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 MPZL1O95297 269 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 SOX14O95416 240 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 HEXAP06865 529 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 NOS3P29474 1203 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 RAD52P43351 418 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 GDI2P50395 445 aaKnown RBP13.84□□□□□ -0.19
TRIM28-213ENST00000598355 CBX1P83916 185 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.84□□□□□ -0.19
TRIM28-213ENST00000598355 CLEC2AQ6UVW9 174 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 RFPL4BQ6ZWI9 263 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 ASRGL1Q7L266 308 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 LRP11Q86VZ4 500 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 C1orf174Q8IYL3 243 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 OR4Q3Q8NH05 313 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 DUS3LQ96G46 650 aaKnown RBP13.84□□□□□ -0.19
TRIM28-213ENST00000598355 SYT3Q9BQG1 590 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 YY1AP1Q9H869 796 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 RPRD1BQ9NQG5 326 aaKnown RBP13.84□□□□□ -0.19
TRIM28-213ENST00000598355 TBC1D23Q9NUY8 699 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 ASH2LQ9UBL3 628 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 DNAJB9Q9UBS3 223 aa13.84□□□□□ -0.19
TRIM28-213ENST00000598355 NIPBLQ6KC79 2804 aaeCLIP13.84□□□□□ -0.19
TRIM28-213ENST00000598355 SONP18583 2426 aaKnown RBP13.83□□□□□ -0.19
TRIM28-213ENST00000598355 C5orf49A4QMS7 147 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 RNF223E7ERA6 249 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 SGCEO43556 437 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 DOK2O60496 412 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 GPANK1O95872 356 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 SLC25A16P16260 332 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 GLO1Q04760 184 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 DBPQ10586 325 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 CCDC92Q53HC0 331 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 TMEM255AQ5JRV8 349 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 OR2T33Q8NG76 320 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 OR52E2Q8NGJ4 325 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 NEU4Q8WWR8 484 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 FAM168AQ92567 244 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 UTP4Q969X6 686 aaKnown RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 MARS2Q96GW9 593 aaKnown RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 RBM4Q9BWF3 364 aaKnown RBP13.83□□□□□ -0.2
TRIM28-213ENST00000598355 TSSK6Q9BXA6 273 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 NMNAT2Q9BZQ4 307 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 RAB1BQ9H0U4 201 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 FN3KQ9H479 309 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 NTN4Q9HB63 628 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 ARMC1Q9NVT9 282 aa13.83□□□□□ -0.2
TRIM28-213ENST00000598355 J3QW42 95 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 NDUFS8O00217 210 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 LY6G6DO95868 133 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 IGHV3-13P01766 116 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 TFP02787 698 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 KLF3P57682 345 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-213ENST00000598355 MEP1BQ16820 701 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 KRTAP27-1Q3LI81 207 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 SLC35F1Q5T1Q4 408 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 MBNL2Q5VZF2 373 aaKnown RBP13.82□□□□□ -0.2
TRIM28-213ENST00000598355 OTPQ5XKR4 325 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 ZCCHC24Q8N2G6 241 aaKnown RBP13.82□□□□□ -0.2
TRIM28-213ENST00000598355 SLC37A3Q8NCC5 494 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 OR1J1Q8NGS3 322 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 NRBF2Q96F24 287 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 VRK1Q99986 396 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-213ENST00000598355 RHNO1Q9BSD3 238 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 MS4A5Q9H3V2 200 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 RERGLQ9H628 205 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 DYNLRB1Q9NP97 96 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 TBCCD1Q9NVR7 557 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 MRPL22Q9NWU5 206 aaKnown RBP13.82□□□□□ -0.2
TRIM28-213ENST00000598355 FZR1Q9UM11 496 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 MALRD1Q5VYJ5 2156 aa13.82□□□□□ -0.2
TRIM28-213ENST00000598355 SMAD7O15105 426 aaKnown RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 RER1O15258 196 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CLPTM1O96005 669 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 LCKP06239 509 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 ADRA2AP08913 450 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 GGT2P36268 569 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 HTR5AP47898 357 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SLC25A1P53007 311 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 RIPPLY3P57055 190 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 LOXL1Q08397 574 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CRMP1Q14194 572 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 MAD2L1BPQ15013 274 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SLC36A3Q495N2 470 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SLC18B1Q6NT16 456 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SHQ1Q6PI26 577 aaKnown RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CLEC9AQ6UXN8 241 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 UNQ6126/PRO20091Q6UXV3 157 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 HS3ST5Q8IZT8 346 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CYB561A3Q8NBI2 242 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SYNPRQ8TBG9 265 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 C4orf45Q96LM5 186 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 HDHD2Q9H0R4 259 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms