RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MSTNO14793 375 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 CGAP01215 116 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 B4GALT1P15291 398 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 CD53P19397 219 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 DCTDP32321 178 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 RPS27P42677 84 aaKnown RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 RGS6P49758 472 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 GP2P55259 537 aaKnown RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 GRB2P62993 217 aaKnown RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 TPBGQ13641 420 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF684Q5T5D7 378 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 TMEM53Q6P2H8 277 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 RPL22L1Q6P5R6 122 aaKnown RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 VWA1Q6PCB0 445 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 CORO6Q6QEF8 472 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 SSX6Q7RTT6 188 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 SATL1Q86VE3 508 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF610Q8N9Z0 462 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF485Q8NCK3 441 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 C1orf162Q8NEQ5 155 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 OR1K1Q8NGR3 316 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 ST7LQ8TDW4 575 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 RNF133Q8WVZ7 376 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 SLAMF6Q96DU3 332 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 SH3GL3Q99963 347 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 HDHD5Q9BXW7 423 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 RNF121Q9H920 327 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 SH3BGRL2Q9UJC5 107 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 OSGIN2Q9Y236 505 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 KLHDC2Q9Y2U9 406 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 MEMO1Q9Y316 297 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 KIAA1549Q9HCM3 1950 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 MAP1BP46821 2468 aaKnown RBP13.39□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF878C9JN71 531 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 CD36P16671 472 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 CPEP16870 476 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 PAX7P23759 505 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 EDNRAP25101 427 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 HSD11B1P28845 292 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 HOXC12P31275 282 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TGM4P49221 684 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 HIST1H3AP68431 136 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 ENDOGQ14249 297 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TRAM1Q15629 374 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TSTQ16762 297 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TIMM50Q3ZCQ8 353 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 ELFN2Q5R3F8 820 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 C1QTNF12Q5T7M4 302 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 HIST2H3PS2Q5TEC6 136 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 C9orf135Q5VTT2 229 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 LIPNQ5VXI9 398 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 MTFR2Q6P444 385 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 HIST2H3AQ71DI3 136 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 SKA3Q8IX90 412 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 BCL2L2Q92843 193 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 SPTSSAQ969W0 71 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TMIGD2Q96BF3 282 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 USB1Q9BQ65 265 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 SLCO1C1Q9NYB5 712 aa13.38□□□□□ -0.27
TRIM28-209ENST00000597423 MRM2Q9UI43 246 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 DSPP15924 2871 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TPRP12270 2363 aaKnown RBP13.38□□□□□ -0.27
TRIM28-209ENST00000597423 TLN1Q9Y490 2541 aaKnown RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 A0A0G2JNJ9 132 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 A0A1B0GUH1 482 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 CCDC160A6NGH7 325 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 A6NHS1 94 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 CCL21O00585 134 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 SGCEO43556 437 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 UBL3O95164 117 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 ITGA5P08648 1049 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 PSMA1P25786 263 aaKnown RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 UBE2NP61088 152 aaKnown RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 PLP2Q04941 152 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF829Q3KNS6 432 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 OTPQ5XKR4 325 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 LRRN1Q6UXK5 716 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 SPATC1Q76KD6 591 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 RPRMLQ8N4K4 120 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 GALNT11Q8NCW6 608 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 DGCR14Q96DF8 476 aaKnown RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 FBXO17Q96EF6 278 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 PELI1Q96FA3 418 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 BOD1Q96IK1 185 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 MAP6Q96JE9 813 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 OPALINQ96PE5 141 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 TTTY10Q9BZA0 68 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 HDHD2Q9H0R4 259 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 SP140LQ9H930 580 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 MOV10Q9HCE1 1003 aaKnown RBP13.37□□□□□ -0.27
TRIM28-209ENST00000597423 ELOVL5Q9NYP7 299 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 PLEK2Q9NYT0 353 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 Q9UFV3 132 aa13.37□□□□□ -0.27
TRIM28-209ENST00000597423 A0A096LPE4 126 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 TRBV2A0A0J9YWF9 115 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 A0A1W2PPZ6 126 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 ACOD1A6NK06 481 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 PSMD9O00233 223 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 RER1O15258 196 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 OGG1O15527 345 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms