RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ZNF3P17036 446 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 PYCR1P32322 319 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 GRK5P34947 590 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 WNT5AP41221 380 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 HTR5AP47898 357 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 PPOXP50336 477 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 NUDT6P53370 316 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 UCP2P55851 309 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 ERVS71-1P61550 626 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 CLEC12BQ2HXU8 276 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 RGS7BPQ6MZT1 257 aaPredicted RBP12.53□□□□□ -0.4
VRK3-206ENST00000594090 SLC27A4Q6P1M0 643 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 FAHD1Q6P587 224 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 PROKR2Q8NFJ6 384 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 OR10H5Q8NGA6 315 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 OR9Q1Q8NGQ5 310 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 DNAJC9Q8WXX5 260 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 SORCS2Q96PQ0 1159 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 SYT3Q9BQG1 590 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 BDH2Q9BUT1 245 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 BCL2L14Q9BZR8 327 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 CMC2Q9NRP2 79 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 PLEK2Q9NYT0 353 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.53□□□□□ -0.4
VRK3-206ENST00000594090 KIF17Q9P2E2 1029 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 NDRG4Q9ULP0 352 aaKnown RBP12.53□□□□□ -0.4
VRK3-206ENST00000594090 FZR1Q9UM11 496 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 LHFPL6Q9Y693 200 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 ARFGEF3Q5TH69 2177 aa12.53□□□□□ -0.4
VRK3-206ENST00000594090 TRIM64A6NGJ6 449 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 TRIM64BA6NI03 449 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 SYNGR3O43761 229 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 HLA-DQA2P01906 255 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 LCKP06239 509 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 POU1F1P28069 291 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 RAD52P43351 418 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 EVX1P49640 407 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 ACTR3P61158 418 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 TEKQ02763 1124 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 KPNB1Q14974 876 aaKnown RBP12.52□□□□□ -0.41
VRK3-206ENST00000594090 CCDC92Q53HC0 331 aaPredicted RBP12.52□□□□□ -0.41
VRK3-206ENST00000594090 DNM1P46Q6ZS02 220 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 AMIGO2Q86SJ2 522 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 LRP11Q86VZ4 500 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 ZNF101Q8IZC7 436 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 LRTOMTQ8WZ04 291 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 NMNAT2Q9BZQ4 307 aa12.52□□□□□ -0.41
VRK3-206ENST00000594090 MRPL22Q9NWU5 206 aaKnown RBP12.52□□□□□ -0.41
VRK3-206ENST00000594090 OR6C6A6NF89 314 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 G3V2T6 193 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 H7C1Q1 480 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 RER1O15258 196 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 SSX4O60224 188 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 ICMTO60725 284 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 GYPBP06028 91 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 CLUP10909 449 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 DAPP51397 102 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 EFNA4P52798 201 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 SLC25A1P53007 311 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 HIST1H3AP68431 136 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 TNK1Q13470 666 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 HIST2H3PS2Q5TEC6 136 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 ACSM5Q6NUN0 579 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 CORO6Q6QEF8 472 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 RFPL4BQ6ZWI9 263 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 HIST2H3AQ71DI3 136 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 HIPK1Q86Z02 1210 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 ICA1LQ8NDH6 482 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 GJC3Q8NFK1 279 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 OR51L1Q8NGJ5 315 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 OR1J1Q8NGS3 322 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 ZNRF4Q8WWF5 429 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 PYDC1Q8WXC3 89 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 VRK1Q99986 396 aaPredicted RBP12.51□□□□□ -0.41
VRK3-206ENST00000594090 DYNLRB1Q9NP97 96 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 PAPOLBQ9NRJ5 636 aaKnown RBP12.51□□□□□ -0.41
VRK3-206ENST00000594090 MYEF2Q9P2K5 600 aaKnown RBP12.51□□□□□ -0.41
VRK3-206ENST00000594090 EIF3KQ9UBQ5 218 aaKnown RBP12.51□□□□□ -0.41
VRK3-206ENST00000594090 ATPIF1Q9UII2 106 aa12.51□□□□□ -0.41
VRK3-206ENST00000594090 F8P00451 2351 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 M0R233 179 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 LY6HO94772 140 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ABHD16AO95870 558 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ZNF250P15622 560 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ZNF23P17027 643 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 SPI1P17947 270 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 GGT2P36268 569 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 CDK5Q00535 292 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 GINS1Q14691 196 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 SLC18B1Q6NT16 456 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 LYPD4Q6UWN0 246 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 UNQ6126/PRO20091Q6UXV3 157 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 CFAP77Q6ZQR2 320 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ZDHHC13Q8IUH4 622 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 LINC00346Q8IVM7 164 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 CIARTQ8N365 385 aaPredicted RBP12.5□□□□□ -0.41
VRK3-206ENST00000594090 PARP8Q8N3A8 854 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ZNF525Q8N782 197 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 OR1F12Q8NHA8 337 aa12.5□□□□□ -0.41
VRK3-206ENST00000594090 ABHD4Q8TB40 342 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms