RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EIF4EP06730 217 aaKnown RBP12.6□□□□□ -0.39
LIG3-205ENST00000585941 CFPP27918 469 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 NBL1P41271 181 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 SOX8P57073 446 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 UBE2NLQ5JXB2 153 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 OTPQ5XKR4 325 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 LRFN4Q6PJG9 635 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 CCBE1Q6UXH8 406 aaPredicted RBP12.6□□□□□ -0.39
LIG3-205ENST00000585941 SYT9Q86SS6 491 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 PRSS33Q8NF86 280 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 OR4M1Q8NGD0 313 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 SLC25A18Q9H1K4 315 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 MOB1AQ9H8S9 216 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 CENPMQ9NSP4 180 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 CKLFQ9UBR5 152 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 OR52A1Q9UKL2 312 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 FOXJ3Q9UPW0 622 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 DHDHQ9UQ10 334 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 EMC9Q9Y3B6 208 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 ETV7Q9Y603 341 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 EP300Q09472 2414 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 ANXA2P2A6NMY6 339 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 SMAD9O15198 467 aaKnown RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 WDPCPO95876 746 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 ANXA2P07355 339 aaKnown RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 KLK2P20151 261 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 INPP1P49441 399 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 GFRA1P56159 465 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 CLDN20P56880 219 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 MFGE8Q08431 387 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 P2RY14Q15391 338 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 WIPI1Q5MNZ9 446 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 BCL2L15Q5TBC7 163 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 MZT2BQ6NZ67 158 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 FOXL2NBQ6ZUU3 175 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 LRRTM1Q86UE6 522 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 TMEM123Q8N131 208 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 GALNT16Q8N428 558 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 CPNE4Q96A23 557 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 ADGRG7Q96K78 797 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 SIGLEC12Q96PQ1 595 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 UCN2Q96RP3 112 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 SRXN1Q9BYN0 137 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 ZNF703Q9H7S9 590 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 G6PC2Q9NQR9 355 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 ETAA1Q9NY74 926 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 MALT1Q9UDY8 824 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 GDF2Q9UK05 429 aaPredicted RBP12.59□□□□□ -0.39
LIG3-205ENST00000585941 SLC22A13Q9Y226 551 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 LHFPL6Q9Y693 200 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 CFAP54Q96N23 3096 aa12.59□□□□□ -0.39
LIG3-205ENST00000585941 PINLYPA6NC86 204 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 SLC43A1O75387 559 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 UBL3O95164 117 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 LIPCP11150 499 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 SNRPBP14678 240 aaKnown RBP12.58□□□□□ -0.4
LIG3-205ENST00000585941 FSTP19883 344 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 MSR1P21757 451 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 ZNF84P51523 738 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 CORO6Q6QEF8 472 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 RDH10Q8IZV5 341 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 OR10AC1Q8NH08 325 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 RAB40AQ8WXH6 277 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 AGAP4Q96P64 663 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 GFI1Q99684 422 aa12.58□□□□□ -0.4
LIG3-205ENST00000585941 IGHV3-15A0A0B4J1V0 119 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 A0A0G2JMP0 313 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 A0A0X1KG70 313 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 MEGF11A6BM72 1044 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 OR5H15A6NDH6 313 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 KLRC4-KLRK1H3BQV0 150 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 TPPPO94811 219 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 WNT11O96014 354 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 PRKAR1AP10644 381 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 MAGEB1P43366 347 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 TAF13Q15543 124 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ABLIM2Q6H8Q1 611 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 LINC00696Q6ZRV3 163 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 SULF2Q8IWU5 870 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 C20orf196Q8IYI0 205 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ZIC4Q8N9L1 334 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 OR4M2Q8NGB6 313 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 OR51A4Q8NGJ6 313 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 OR5H6Q8NGV6 325 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 OR10D3Q8NH80 312 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 LGALS14Q8TCE9 139 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ASB5Q8WWX0 329 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ZNF385AQ96PM9 386 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 SMAD5Q99717 465 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 WACQ9BTA9 647 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 NELFAQ9H3P2 528 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 EMC7Q9NPA0 242 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ASCL3Q9NQ33 180 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 RHBDL2Q9NX52 303 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 FOXD3Q9UJU5 478 aaPredicted RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 FBXL3Q9UKT7 428 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 CAMK2AQ9UQM7 478 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 PCDHGA9Q9Y5G4 932 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 MED13Q9UHV7 2174 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 A0A087WV48 116 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms