RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 SLC2A7Q6PXP3 512 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 NLRC3Q7RTR2 1065 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 REC114Q7Z4M0 266 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 ARMC8Q8IUR7 673 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 C10orf111Q8N326 155 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 GOLGA6L1Q8N7Z2 621 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 ATG16L2Q8NAA4 619 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 NPEPL1Q8NDH3 523 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 OR9I1Q8NGQ6 314 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 VANGL1Q8TAA9 524 aaPredicted RBP10.61□□□□□ -0.71
SS18-219ENST00000581570 ZNF420Q8TAQ5 688 aaPredicted RBP10.61□□□□□ -0.71
SS18-219ENST00000581570 CMBLQ96DG6 245 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 PCGF1Q9BSM1 259 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 POFUT1Q9H488 388 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 SMURF2Q9HAU4 748 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.61□□□□□ -0.71
SS18-219ENST00000581570 SDR39U1Q9NRG7 319 aaPredicted RBP10.61□□□□□ -0.71
SS18-219ENST00000581570 KIF17Q9P2E2 1029 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 CLN8Q9UBY8 286 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 TIMM10BQ9Y5J6 103 aa10.61□□□□□ -0.71
SS18-219ENST00000581570 H0YL77 283 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 P2RY10O00398 339 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 LYPD3O95274 346 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 THY1P04216 161 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 CST2P09228 141 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 HOXB9P17482 250 aaPredicted RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 TUBG1P23258 451 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 SLC6A2P23975 617 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 LAP3P28838 519 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 PCBP3P57721 371 aaKnown RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 PCBD1P61457 104 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 FMODQ06828 376 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 RPL18Q07020 188 aaKnown RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 BST1Q10588 318 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 ENTPD8Q5MY95 495 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 PTOV1Q86YD1 416 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 ZSCAN4Q8NAM6 433 aaPredicted RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 SMYD1Q8NB12 490 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.6□□□□□ -0.716e-8■■■■□ 26.7
SS18-219ENST00000581570 NMD3Q96D46 503 aaKnown RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 CDADC1Q9BWV3 514 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 TUBG2Q9NRH3 451 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 INIPQ9NRY2 104 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 TBCCD1Q9NVR7 557 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 SLC25A37Q9NYZ2 338 aa10.6□□□□□ -0.71
SS18-219ENST00000581570 STX18Q9P2W9 335 aaKnown RBP10.6□□□□□ -0.71
SS18-219ENST00000581570 NBEAL2Q6ZNJ1 2754 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 CENPVL3A0A0U1RRI6 287 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 ENSAO43768 121 aaKnown RBP10.59□□□□□ -0.71
SS18-219ENST00000581570 PIP5K1CO60331 668 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 IGHV4-59P01825 116 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 SFTPBP07988 381 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 KITP10721 976 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 AQP2P41181 271 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 GUCA1AP43080 201 aaPredicted RBP10.59□□□□□ -0.71
SS18-219ENST00000581570 CD47Q08722 323 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 NPTX1Q15818 432 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 ZNF404Q494X3 552 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 ARMC4Q5T2S8 1044 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 SAMD5Q5TGI4 173 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 WDR25Q64LD2 544 aaPredicted RBP10.59□□□□□ -0.71
SS18-219ENST00000581570 SLC25A47Q6Q0C1 308 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 Q6ZSV7 163 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 MSRB3Q8IXL7 192 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 OR6T1Q8NGN1 323 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 MRAPQ8TCY5 172 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 ADAMTS16Q8TE57 1224 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 C10orf82Q8WW14 230 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 GATAD2BQ8WXI9 593 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 HDAC2Q92769 488 aaKnown RBP10.59□□□□□ -0.71
SS18-219ENST00000581570 HAVCR1Q96D42 359 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 MPP4Q96JB8 637 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 MEGF10Q96KG7 1140 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 C16orf95Q9H693 158 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 TMEM38AQ9H6F2 299 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 ACOXLQ9NUZ1 547 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 NDRG4Q9ULP0 352 aaKnown RBP10.59□□□□□ -0.71
SS18-219ENST00000581570 SLC7A7Q9UM01 511 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 STARD10Q9Y365 291 aa10.59□□□□□ -0.71
SS18-219ENST00000581570 TRAPPC13A5PLN9 417 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 GMNCA6NCL1 334 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 C22orf46C9J442 243 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 PHYHO14832 338 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 UBDO15205 165 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 TOX4O94842 621 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 FSTL3O95633 263 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 NR2C1P13056 603 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 FUT1P19526 365 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 PPIBP23284 216 aaKnown RBP10.58□□□□□ -0.72
SS18-219ENST00000581570 CFHR2P36980 270 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 IER3P46695 156 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 DUSP7Q16829 419 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 FAM201AQ5SY85 155 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 LYPD2Q6UXB3 125 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 GDPGP1Q6ZNW5 385 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 VASH1Q7L8A9 365 aaPredicted RBP10.58□□□□□ -0.72
SS18-219ENST00000581570 RBM45Q8IUH3 476 aaKnown RBP10.58□□□□□ -0.72
SS18-219ENST00000581570 OR5AS1Q8N127 324 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 PTP4A1Q93096 173 aa10.58□□□□□ -0.72
SS18-219ENST00000581570 RBP7Q96R05 134 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms