RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 OR10S1Q8NGN2 331 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 OR2AJ1Q8NGZ0 328 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 OR5AK2Q8NH90 309 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 FNDC9Q8TBE3 224 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 SLC25A46Q96AG3 418 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 SLAMF6Q96DU3 332 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 KCNS3Q9BQ31 491 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 SMURF1Q9HCE7 757 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 B3GAT2Q9NPZ5 323 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CENPMQ9NSP4 180 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 FRRS1LQ9P0K9 344 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 FBXL3Q9UKT7 428 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 CLEC4AQ9UMR7 237 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 GTF2A1LQ9UNN4 478 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 A3GALT2U3KPV4 340 aa9.29□□□□□ -0.92
SS18-217ENST00000580958 ANKRD11Q6UB99 2663 aaPredicted RBP9.29□□□□□ -0.92
SS18-217ENST00000580958 PTPRQQ9UMZ3 2332 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CELSR3Q9NYQ7 3312 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 A0A1W2PPK0 400 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 K7EM74 188 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 GPR171O14626 319 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZNF254O75437 659 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 SRSF10O75494 262 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 WISP2O76076 250 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZFPL1O95159 310 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 PNPP00491 289 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 BMP4P12644 408 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CPN1P15169 458 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 MSR1P21757 451 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 MYL9P24844 172 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 GUCA1AP43080 201 aaPredicted RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 MAGEB1P43366 347 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 MTNR1BP49286 362 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 BMXP51813 675 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 LSM6P62312 80 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 DYNC1I2Q13409 638 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 ENDOGQ14249 297 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 YIF1BQ5BJH7 314 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZNF544Q6NX49 715 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CFAP77Q6ZQR2 320 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 Q6ZS92 163 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 LINC00299Q6ZSB3 139 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 LINGO2Q7L985 606 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CATSPERDQ86XM0 798 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 TUSC5Q8IXB3 177 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZNF676Q8N7Q3 588 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 RBMXL3Q8N7X1 1067 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 TEX19Q8NA77 164 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 RNF133Q8WVZ7 376 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 NABP1Q96AH0 204 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZNF837Q96EG3 531 aaPredicted RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 OR14A2Q96R54 314 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 TAAR6Q96RI8 345 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ZNF416Q9BWM5 594 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 NELFAQ9H3P2 528 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 C1orf198Q9H425 327 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CALHM2Q9HA72 323 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 GPR35Q9HC97 309 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 AKIP1Q9NQ31 210 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 EMC3Q9P0I2 261 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 ASH2LQ9UBL3 628 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 PLEKHB1Q9UF11 243 aaPredicted RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 SLC22A13Q9Y226 551 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 NOSIPQ9Y314 301 aaKnown RBP9.28□□□□□ -0.92
SS18-217ENST00000580958 R4GMQ9 66 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 CACNA1GO43497 2377 aa9.28□□□□□ -0.92
SS18-217ENST00000580958 A0A075B6Q4 140 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ACOD1A6NK06 481 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 TMEM212A6NML5 194 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ZNF724A8MTY0 619 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ZNF879B4DU55 563 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 H3BSH0 61 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 AQP7O14520 342 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ZNHIT1O43257 154 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 GATBO75879 557 aaKnown RBP9.27□□□□□ -0.93
SS18-217ENST00000580958 UCHL1P09936 223 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 CCR9P51686 369 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ZNF846Q147U1 533 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 RNPS1Q15287 305 aaKnown RBP9.27□□□□□ -0.93
SS18-217ENST00000580958 INAQ16352 499 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 TBR1Q16650 682 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ODF4Q2M2E3 257 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 CEACAM16Q2WEN9 425 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 DEGS2Q6QHC5 323 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 KLHL24Q6TFL4 600 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.27□□□□□ -0.93
SS18-217ENST00000580958 SIAH3Q8IW03 269 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 MCEMP1Q8IX19 187 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 MFSD4AQ8N468 514 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 OR10AC1Q8NH08 325 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 CPT1CQ8TCG5 803 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 S100ZQ8WXG8 99 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 PPP1R14AQ96A00 147 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 ALKBH3Q96Q83 286 aaPredicted RBP9.27□□□□□ -0.93
SS18-217ENST00000580958 COMMD4Q9H0A8 199 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 SLCO5A1Q9H2Y9 848 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 RNF122Q9H9V4 155 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 PLGRKTQ9HBL7 147 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 SLC24A3Q9HC58 644 aa9.27□□□□□ -0.93
SS18-217ENST00000580958 G6PC2Q9NQR9 355 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms