RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CCDC22O60826 627 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 SBK2P0C263 348 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 COX5BP10606 129 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 TUBG1P23258 451 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 RAP1BP61224 184 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 RAP1AP62834 184 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 FOXL1Q12952 345 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 FHL1Q13642 323 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 TMEM155Q4W5P6 130 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 DOK3Q7L591 496 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 ZNF283Q8N7M2 679 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 SIGLECL1Q8N7X8 197 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 NPEPL1Q8NDH3 523 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 PRRC1Q96M27 445 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 WACQ9BTA9 647 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 PATZ1Q9HBE1 687 aaKnown RBP17.77■□□□□ 0.44
VPS53-216ENST00000574029 POLE4Q9NR33 117 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 TUBG2Q9NRH3 451 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 TBCCD1Q9NVR7 557 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 FAM53CQ9NYF3 392 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 NUP50Q9UKX7 468 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 PCDHGB1Q9Y5G3 927 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 C12orf71A8MTZ7 269 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 TRAPPC2LH3BP13 241 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 SNX3O60493 162 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 SCG5P05408 212 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 GSTM3P21266 225 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 FUT4P22083 530 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 KDELR2P33947 212 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 SLC6A9P48067 706 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 GNGT1P63211 74 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 ZNF154Q13106 437 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 ANKDD1AQ495B1 522 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 PRR31Q5SQ13 230 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 RBMS3Q6XE24 437 aaKnown RBP17.76■□□□□ 0.43
VPS53-216ENST00000574029 CPLX4Q7Z7G2 160 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 SPICQ8N5J4 248 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 SAMD8Q96LT4 415 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 NSRP1Q9H0G5 558 aaKnown RBP17.76■□□□□ 0.43
VPS53-216ENST00000574029 POFUT1Q9H488 388 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 EGFL7Q9UHF1 273 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 CAPN7Q9Y6W3 813 aa17.76■□□□□ 0.43
VPS53-216ENST00000574029 ABHD16AO95870 558 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 ZNF12P17014 697 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 TNFRSF1AP19438 455 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 KITLGP21583 273 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 RBMXP38159 391 aaKnown RBP17.75■□□□□ 0.43
VPS53-216ENST00000574029 SELENOWP63302 87 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 PRKCDQ05655 676 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 LRRC23Q53EV4 343 aaPredicted RBP17.75■□□□□ 0.43
VPS53-216ENST00000574029 ARMCX4Q5H9R4 360 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 KLF17Q5JT82 389 aaPredicted RBP17.75■□□□□ 0.43
VPS53-216ENST00000574029 Q6ZR03 302 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 LRRC28Q86X40 367 aaPredicted RBP17.75■□□□□ 0.43
VPS53-216ENST00000574029 NRMQ8IXM6 262 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 KLHL36Q8N4N3 616 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 OR51A7Q8NH64 312 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 TPD52L3Q96J77 140 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 SIGLEC11Q96RL6 698 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 MAN2C1Q9NTJ4 1040 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 PLEK2Q9NYT0 353 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 ZNF69Q9UC07 566 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 INSIG2Q9Y5U4 225 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 AUP1Q9Y679 476 aa17.75■□□□□ 0.43
VPS53-216ENST00000574029 TRAV27A0A087WT01 109 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 LOC100653049A0A140TA62 436 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 A8MXK9 166 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 FAM220BPB1ANY3 271 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 F5H0A9 414 aaPredicted RBP17.74■□□□□ 0.43
VPS53-216ENST00000574029 MRASO14807 208 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 TMPRSS2O15393 492 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 KRT34O76011 436 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 TNFSF4P23510 183 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 PRTN3P24158 256 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 IFNA8P32881 189 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 SEC61A1P61619 476 aaKnown RBP17.74■□□□□ 0.43
VPS53-216ENST00000574029 SHISA2Q6UWI4 295 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 MICU2Q8IYU8 434 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 OR2Z1Q8NG97 314 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 RP9Q8TA86 221 aaKnown RBP17.74■□□□□ 0.43
VPS53-216ENST00000574029 GPA33Q99795 319 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 ZNF696Q9H7X3 374 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 ZMAT3Q9HA38 289 aaKnown RBP17.74■□□□□ 0.43
VPS53-216ENST00000574029 EMC7Q9NPA0 242 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 ARMCX1Q9P291 453 aa17.74■□□□□ 0.43
VPS53-216ENST00000574029 EFCAB9A8MZ26 197 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 SLC9A3P48764 834 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 BTG1P62324 171 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 SCRN3Q0VDG4 424 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 ZMYND11Q15326 602 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 PIGWQ7Z7B1 504 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 OAFQ86UD1 273 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 OFCC1Q8IZS5 231 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 PCYOX1LQ8NBM8 494 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 FAM156AQ8NDB6 213 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 C1orf147Q96MC9 270 aaPredicted RBP17.73■□□□□ 0.43
VPS53-216ENST00000574029 MYLK2Q9H1R3 596 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 IL19Q9UHD0 177 aa17.73■□□□□ 0.43
VPS53-216ENST00000574029 DNAJC9-AS1A6NH13 148 aa17.72■□□□□ 0.43
VPS53-216ENST00000574029 H7C1C5 153 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms