RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HOXB6P17509 224 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 FUT1P19526 365 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 DCKP27707 260 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 PEX2P28328 305 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CDAP32320 146 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 PCGF2P35227 344 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MPV17P39210 176 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 AQP2P41181 271 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CRYBB2P43320 205 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 COMPP49747 757 aaPredicted RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 ENTPD1P49961 510 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MMP15P51511 669 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 DEFA1P59665 94 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 DEFA3P59666 94 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 RPS23P62266 143 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 CCL8P80075 99 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 GALK2Q01415 458 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FMODQ06828 376 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FHL1Q13642 323 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FLOT2Q14254 428 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CYP51A1Q16850 503 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 VMACQ2NL98 169 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ANKDD1AQ495B1 522 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SPATS1Q496A3 300 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 NRN1LQ496H8 165 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 AVPI1Q5T686 147 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 TTC33Q6PID6 262 aaPredicted RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 AKAP14Q86UN6 197 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SNX32Q86XE0 403 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CLVS1Q8IUQ0 354 aaPredicted RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 ZNF101Q8IZC7 436 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 LRRC18Q8N456 261 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CLDN22Q8N7P3 220 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 LRRC75AQ8NAA5 344 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SYT14Q8NB59 555 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 NOXO1Q8NFA2 376 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 OR51F2Q8NH61 342 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 OR10A6Q8NH74 314 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MOSPD2Q8NHP6 518 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ZNF519Q8TB69 540 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SYNPRQ8TBG9 265 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 LIPHQ8WWY8 451 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 HDAC2Q92769 488 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 POP5Q969H6 163 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 ISOC1Q96CN7 298 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MARS2Q96GW9 593 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 POM121L2Q96KW2 1035 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 AIFM2Q9BRQ8 373 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ZNF416Q9BWM5 594 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 PLA2G12AQ9BZM1 189 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SLC19A3Q9BZV2 496 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ZNF665Q9H7R5 613 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 NANOGQ9H9S0 305 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ESM1Q9NQ30 184 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 HINT3Q9NQE9 182 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 DCAF16Q9NXF7 216 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 OPN4Q9UHM6 478 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 KLHL21Q9UJP4 597 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 SLC13A4Q9UKG4 626 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FBXL3Q9UKT7 428 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 ZNF346Q9UL40 294 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 RABL2BQ9UNT1 228 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 POMPQ9Y244 141 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 NDUFAF1Q9Y375 327 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MEGF8Q7Z7M0 2845 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 TRAV20A0A0B4J274 112 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 IGHV1-69-2A0A0G2JMI3 117 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 A0A1W2PPW3 197 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 SLC22A23A1A5C7 686 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 TMEM89A2RUT3 159 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ZSCAN5BA6NJL1 495 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 TRIM64CA6NLI5 447 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 BLOC1S5-TXNDC5H3BN57 136 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 H3BSA7 217 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 WIPF1O43516 503 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 TSPAN9O75954 239 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 CLPXO76031 633 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 OR7A10O76100 309 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 OR6A2O95222 327 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 PNPP00491 289 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 IGF2P01344 180 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 IGHV1-46P01743 117 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 IGHG1P01857 330 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 APOA1P02647 267 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 SCG5P05408 212 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 LCKP06239 509 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ZNF32P17041 273 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 EGR1P18146 543 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ADRA2CP18825 462 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 MAKP20794 623 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 BLVRAP53004 296 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 KLF3P57682 345 aaPredicted RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 HILS1P60008 231 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 MRPS34P82930 218 aaKnown RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 PSG4Q00888 419 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 MVKQ03426 396 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 GLO1Q04760 184 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 TRAP1Q12931 704 aaKnown RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 PIN1Q13526 163 aaPredicted RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 LAPTM4AQ15012 233 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms