RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PCTPQ9UKL6 214 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 RNF11Q9Y3C5 154 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMED3Q9Y3Q3 217 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 CSDC2Q9Y534 153 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 BSNQ9UPA5 3926 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 NUP214P35658 2090 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 SHANK1Q9Y566 2161 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 HIVEP3Q5T1R4 2406 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 TRAV17A0A0B4J275 112 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 A0A0G2JN53 185 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 FRG2CA6NGY1 282 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 A6NNC1 897 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 A8MT66 165 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 SERPINE3A8MV23 424 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 H3BTX0 84 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 OR7A17O14581 309 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RS1O15537 224 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 HSPA12AO43301 675 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 SEMA3DO95025 777 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 OR5F1O95221 314 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RPS17P08708 135 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 UQCRBP14927 111 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 NQO2P16083 231 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ACADSP16219 412 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 CRYBB2P43320 205 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 LIM2P55344 173 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 PKNOX1P55347 436 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 CD81P60033 236 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ERVK-8P63133 956 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 BTG2P78543 158 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ID2Q02363 134 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 VAMP3Q15836 100 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ETFDHQ16134 617 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ACSF3Q4G176 576 aaPredicted RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 ZNF678Q5SXM1 525 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 OR4F3Q6IEY1 312 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 H3F3CQ6NXT2 135 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 IGFL2Q6UWQ7 119 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 LANCL3Q6ZV70 420 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 PLCZ1Q86YW0 608 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 PRSS35Q8N3Z0 413 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 C17orf78Q8N4C9 275 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 C1orf52Q8N6N3 182 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 CCNYL1Q8N7R7 359 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RBMXL3Q8N7X1 1067 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 OR4F6Q8NGB9 312 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 TMEM18Q96B42 140 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 L3HYPDHQ96EM0 354 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 CXorf58Q96LI9 332 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 IMMP1LQ96LU5 166 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 ZNF382Q96SR6 550 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 PELOQ9BRX2 385 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 DEFB126Q9BYW3 111 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 NPFFR1Q9GZQ6 430 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 SEMA6AQ9H2E6 1030 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 OR51B5Q9H339 312 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RPF2Q9H7B2 306 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 ADAP2Q9NPF8 381 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 VPS29Q9UBQ0 182 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 MIOXQ9UGB7 285 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 FBXL2Q9UKC9 423 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 MRTO4Q9UKD2 239 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 UTS2RQ9UKP6 389 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 IKZF2Q9UKS7 526 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 LAMP3Q9UQV4 416 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RNF6Q9Y252 685 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 GSTK1Q9Y2Q3 226 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 RBMX2Q9Y388 322 aaKnown RBP5.32□□□□□ -1.56
VPS53-212ENST00000572259 DOPEY2Q9Y3R5 2298 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 CPAMD8Q8IZJ3 1885 aa5.32□□□□□ -1.56
VPS53-212ENST00000572259 EML6Q6ZMW3 1958 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 IGHV3-20A0A0C4DH32 117 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 A0A1W2PRB8 838 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 MEX3AA1L020 520 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 GOLGA6L10A6NI86 522 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SAGE2PA6NJ88 616 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TMEM210A6NLX4 147 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 LRRC30A6NM36 301 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 A8MUA0 341 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 K7EM74 188 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 RHODO00212 210 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 P2RY10O00398 339 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SAP18O00422 153 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 RGS16O15492 202 aaPredicted RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 SH3BGRLO75368 114 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 PDE5AO76074 875 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ZFAND5O76080 213 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SCELO95171 688 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 AHSA1O95433 338 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TXNDC12O95881 172 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SHBGP04278 402 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 CELA2AP08217 269 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 HSMCR30P0CW71 290 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 NCK1P16333 377 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SLC7A2P52569 658 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 DNAJB13P59910 316 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 DSTNP60981 165 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 Q0VFX4 171 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 CRMP1Q14194 572 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 DAZAP2Q15038 168 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms