RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DTX3Q8N9I9 347 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 ATG16L2Q8NAA4 619 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 TMEM43Q9BTV4 400 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 ERVK-18Q9QC07 812 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 ADARB2-AS1A8MUL3 147 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 CENPBD1B2RD01 187 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 ZNF133P52736 654 aaPredicted RBP14.83□□□□□ -0.04
CLK3-227ENST00000570296 ZBTB37Q5TC79 503 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 ZNF572Q7Z3I7 529 aaPredicted RBP14.83□□□□□ -0.04
CLK3-227ENST00000570296 IGFN1Q86VF2 1251 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 MOGAT3Q86VF5 341 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 NABP1Q96AH0 204 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 HAVCR1Q96D42 359 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 CMBLQ96DG6 245 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 TMEM19Q96HH6 336 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 TEX37Q96LM6 180 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 ZIM3Q96PE6 472 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 ZNF347Q96SE7 839 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 SEPHS2Q99611 448 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 OR2H1Q9GZK4 316 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 WNT5BQ9H1J7 359 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 SEMA6AQ9H2E6 1030 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 TBCCD1Q9NVR7 557 aa14.83□□□□□ -0.04
CLK3-227ENST00000570296 E9PBE3 544 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 COPEO14579 308 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 RNF13O43567 381 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 ABHD16AO95870 558 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 CDKN2CP42773 168 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 MVDP53602 400 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 ARF6P62330 175 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 LRRC74AQ0VAA2 488 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 NOXO1Q8NFA2 376 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 CLPTM1LQ96KA5 538 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 MRPL13Q9BYD1 178 aaKnown RBP14.82□□□□□ -0.04
CLK3-227ENST00000570296 POFUT1Q9H488 388 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 TAS2R5Q9NYW4 299 aa14.82□□□□□ -0.04
CLK3-227ENST00000570296 A0A0B4J2E0 115 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 A0A1B0GX12 115 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 TMEM247A6NEH6 219 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 OPN1SWP03999 348 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 CD28P10747 220 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 ETFAP13804 333 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 ECHS1P30084 290 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 CDAP32320 146 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 DSTNP60981 165 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 ERVK-25P63136 954 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 EGFEM1PQ0D2K5 195 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 C11orf91Q3C1V1 193 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 CEP85LQ5SZL2 805 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 METAP1DQ6UB28 335 aaPredicted RBP14.81□□□□□ -0.04
CLK3-227ENST00000570296 OR10AD1Q8NGE0 317 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 IFT81Q8WYA0 676 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 RCC1LQ96I51 464 aaKnown RBP14.81□□□□□ -0.04
CLK3-227ENST00000570296 THUMPD1Q9NXG2 353 aaKnown RBP14.81□□□□□ -0.04
CLK3-227ENST00000570296 CTSZQ9UBR2 303 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 UGT2A1Q9Y4X1 527 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 KPTNQ9Y664 436 aa14.81□□□□□ -0.04
CLK3-227ENST00000570296 A0A1B0GVI7 797 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 DUS4LO95620 317 aaKnown RBP14.8□□□□□ -0.04
CLK3-227ENST00000570296 PAHP00439 452 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 IRF2P14316 349 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 PRKAR1BP31321 381 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 SERPINB5P36952 375 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 SLC35A2P78381 396 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 GUCY1A3Q02108 690 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 KCNJ8Q15842 424 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 CDONQ4KMG0 1287 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 SWT1Q5T5J6 900 aaKnown RBP14.8□□□□□ -0.04
CLK3-227ENST00000570296 FAM27BQ5VT28 67 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 VMO1Q7Z5L0 202 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 NUDCD3Q8IVD9 361 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 OR13G1Q8NGZ3 307 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 MUC7Q8TAX7 377 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 COG8Q96MW5 612 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 MMADHCQ9H3L0 296 aaPredicted RBP14.8□□□□□ -0.04
CLK3-227ENST00000570296 CNTD2Q9H8S5 307 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 SMURF2Q9HAU4 748 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 BCL2L10Q9HD36 194 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 NDRG4Q9ULP0 352 aaKnown RBP14.8□□□□□ -0.04
CLK3-227ENST00000570296 TMCC3Q9ULS5 477 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 MAB21L2Q9Y586 359 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 TIMM10BQ9Y5J6 103 aa14.8□□□□□ -0.04
CLK3-227ENST00000570296 EEF1B2P24534 225 aaKnown RBP14.79□□□□□ -0.04
CLK3-227ENST00000570296 ALDH3A1P30838 453 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 PMELP40967 661 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 NCALDP61601 193 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 GUCA2AQ02747 115 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 CKAP4Q07065 602 aaKnown RBP14.79□□□□□ -0.04
CLK3-227ENST00000570296 SGCAQ16586 387 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 TRMT10CQ7L0Y3 403 aaKnown RBP14.79□□□□□ -0.04
CLK3-227ENST00000570296 HDDC2Q7Z4H3 204 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 PTP4A1Q93096 173 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 CITED2Q99967 270 aaPredicted RBP14.79□□□□□ -0.04
CLK3-227ENST00000570296 AKTIPQ9H8T0 292 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 TMEM27Q9HBJ8 222 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 RAB18Q9NP72 206 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 PCLOQ9Y6V0 5065 aa14.79□□□□□ -0.04
CLK3-227ENST00000570296 NPFFO15130 113 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 RIPK2O43353 540 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 ECDO95905 644 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms