RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CTLA4P16410 223 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 PPP1R1AQ13522 171 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 UBXN2BQ14CS0 331 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 KLHL24Q6TFL4 600 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 CDC20BQ86Y33 519 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 CLRN3Q8NCR9 226 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 CTHRC1Q96CG8 243 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 SEH1LQ96EE3 360 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 PHB2Q99623 299 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 ABHD6Q9BV23 337 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 EMC6Q9BV81 110 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 MTIF3Q9H2K0 278 aaKnown RBP13.07□□□□□ -0.32
VPS35-210ENST00000568784 TMED7Q9Y3B3 224 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 A0A0D9SG52 128 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 A0A1B0GV50 99 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 LOC107986453A0A1B0GWG9 222 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 MPIG6BO95866 241 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 NAGAP17050 411 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 BAMBIQ13145 260 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 OTOSQ8NHW6 89 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.06□□□□□ -0.32
VPS35-210ENST00000568784 NPAS1Q99742 590 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 WDR13Q9H1Z4 485 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 HIF3AQ9Y2N7 669 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 K7EQS6 105 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 STK17BO94768 372 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ATG12O94817 140 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 FGF2P09038 288 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 PGAM2P15259 253 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 MGMTP16455 207 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 BDKRB2P30411 391 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 CLVS2Q5SYC1 327 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 TMEM71Q6P5X7 295 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 OVCH2Q7RTZ1 564 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 DCXRQ7Z4W1 244 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 FJX1Q86VR8 437 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ZNF440Q8IYI8 595 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 PELOQ9BRX2 385 aaKnown RBP13.06□□□□□ -0.32
VPS35-210ENST00000568784 CST11Q9H112 138 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 NPIPA5E9PKD4 350 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ERCC1P07992 297 aaPredicted RBP13.06□□□□□ -0.32
VPS35-210ENST00000568784 GNB3P16520 340 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 CNR1P21554 472 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 IL10RAQ13651 578 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 NR0B2Q15466 257 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ZNF141Q15928 474 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 CARD17Q5XLA6 110 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 AWAT2Q6E213 333 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 HSD17B13Q7Z5P4 300 aaPredicted RBP13.06□□□□□ -0.32
VPS35-210ENST00000568784 NAXDQ8IW45 347 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 ZNF679Q8IYX0 411 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 CLEC1AQ8NC01 280 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 OR5D18Q8NGL1 313 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 FOXRED1Q96CU9 486 aaPredicted RBP13.06□□□□□ -0.32
VPS35-210ENST00000568784 MRGPRX1Q96LB2 322 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 TMPRSS13Q9BYE2 586 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 NPIPA1Q9UND3 350 aa13.06□□□□□ -0.32
VPS35-210ENST00000568784 A8MXK9 166 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 HRH1P35367 487 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 NPY4RP50391 375 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 NSDHLQ15738 373 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 ZNF585AQ6P3V2 769 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 LCORQ96JN0 433 aaPredicted RBP13.05□□□□□ -0.32
VPS35-210ENST00000568784 ZNF587Q96SQ5 575 aaPredicted RBP13.05□□□□□ -0.32
VPS35-210ENST00000568784 NMNAT2Q9BZQ4 307 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 MRPS18BQ9Y676 258 aaKnown RBP13.05□□□□□ -0.32
VPS35-210ENST00000568784 LINC01565O15544 149 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 RAB3AP20336 220 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 C16orf47Q6ZP98 133 aaPredicted RBP13.05□□□□□ -0.32
VPS35-210ENST00000568784 OR6K3Q8NGY3 331 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 LRFN5Q96NI6 719 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 OR8B4Q96RC9 309 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 CSAG2Q9Y5P2 127 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 FBXO24O75426 580 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 SEMA4FO95754 770 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 GIMD1P0DJR0 217 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 GLO1Q04760 184 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 C11orf87Q6NUJ2 197 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 H3F3CQ6NXT2 135 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 TMEM200AQ86VY9 491 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 ZNF615Q8N8J6 731 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 MAFIPQ8WZ33 124 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 SLC25A21Q9BQT8 299 aaPredicted RBP13.05□□□□□ -0.32
VPS35-210ENST00000568784 ACKR4Q9NPB9 350 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 MED29Q9NX70 200 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 LRP12Q9Y561 859 aa13.05□□□□□ -0.32
VPS35-210ENST00000568784 GFERP55789 205 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 CSRP2Q16527 193 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ADGRE4PQ86SQ3 457 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ATG4DQ86TL0 474 aaPredicted RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 FLVCR1-AS1Q8TAF5 88 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 MARCH1Q8TCQ1 289 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 ELP5Q8TE02 316 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 FAM71F1Q96KD3 344 aaPredicted RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 BANF2Q9H503 90 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 CHMP1AQ9HD42 196 aaPredicted RBP13.04□□□□□ -0.32
VPS35-210ENST00000568784 MKL2Q9ULH7 1088 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 KIAA1549LQ6ZVL6 1849 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 SCGB1D2O95969 90 aa13.04□□□□□ -0.32
VPS35-210ENST00000568784 KNG1P01042 644 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms