RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AKAP7Q9P0M2 348 aaPredicted RBP18.06■□□□□ 0.48
CLN3-230ENST00000568076 NSG1A0A0A6YYJ2 146 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 SLC17A2O00624 439 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 LMX1BO60663 402 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 ISG15P05161 165 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 H2BFMP0C1H6 154 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 FSTP19883 344 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 LAP3P28838 519 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 SSR4P51571 173 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 CLRN1P58418 232 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 FCN2Q15485 313 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 DNM1P46Q6ZS02 220 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 LIX1LQ8IVB5 337 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 SLAMF6Q96DU3 332 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 GNRHR2Q96P88 292 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 PISDQ9UG56 409 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 FBXO4Q9UKT5 387 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 HHLA2Q9UM44 414 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 HDGFL3Q9Y3E1 203 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 MED12Q93074 2177 aa18.05■□□□□ 0.48
CLN3-230ENST00000568076 G3V3Y1 287 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 SMLR1H3BR10 107 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 XRCC3O43542 346 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ECDO95905 644 aaPredicted RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 IGHG1P01857 330 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 FOLR3P41439 243 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 EIF1AXP47813 144 aaKnown RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 MRPS10P82664 201 aaKnown RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 RAB11BQ15907 218 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ZNF239Q16600 458 aaKnown RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 GSG1Q2KHT4 349 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 C2orf76Q3KRA6 126 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 Q5BKY6 102 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 CARD17Q5XLA6 110 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 SFRP4Q6FHJ7 346 aaPredicted RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 ANKRD16Q6P6B7 361 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 GTPBP8Q8N3Z3 284 aaPredicted RBP18.04■□□□□ 0.48
CLN3-230ENST00000568076 OR10H5Q8NGA6 315 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 OR51A2Q8NGJ7 313 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 OR1J4Q8NGS1 313 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 PAQR8Q8TEZ7 354 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ITFG2Q969R8 447 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 SLC25A28Q96A46 364 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 FAM3DQ96BQ1 224 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 OXGR1Q96P68 337 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 FAM206AQ9NX38 181 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 A0A1W2PPL8 197 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ANKRD20A5PA0PJZ0 165 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 FAM172BPA6NC97 362 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 AQP7P3A6NL99 342 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 B4E171 279 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ACOT7O00154 380 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 CTAG2O75638 210 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 C1QBP02746 253 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 CD2P06729 351 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 H2AFB2P0C5Z0 115 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 ACHEP22303 614 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 TSPAN7P41732 249 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 GZMKP49863 264 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 MMP16P51512 607 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 DBX2Q6ZNG2 339 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 DTWD2Q8NBA8 298 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 OR13C3Q8NGS6 347 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 OR6X1Q8NH79 312 aa18.04■□□□□ 0.48
CLN3-230ENST00000568076 SULT2B1O00204 365 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 CD37P11049 281 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 CDAP32320 146 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 MLF1P58340 268 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 RPS18P62269 152 aaKnown RBP18.03■□□□□ 0.48
CLN3-230ENST00000568076 FAPQ12884 760 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 MAB21L1Q13394 359 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 ZNF468Q5VIY5 522 aaPredicted RBP18.03■□□□□ 0.48
CLN3-230ENST00000568076 TMPPEQ6ZT21 453 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 RPS19BP1Q86WX3 136 aaKnown RBP18.03■□□□□ 0.48
CLN3-230ENST00000568076 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.03■□□□□ 0.48
CLN3-230ENST00000568076 MED28Q9H204 178 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 EMC7Q9NPA0 242 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 CKLFQ9UBR5 152 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 LHFPL6Q9Y693 200 aa18.03■□□□□ 0.48
CLN3-230ENST00000568076 A0A087WZY1 265 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 CIB4A0PJX0 185 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 PMS2P1A4D2B8 440 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 P2RY10O00398 339 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 KDM4BO94953 1096 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 LIFP15018 202 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 DCTDP32321 178 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 RAG2P55895 527 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 GPR85P60893 370 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 SLC25A47Q6Q0C1 308 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 CFAP77Q6ZQR2 320 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 OR11H7Q8NGC8 314 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 RHBDD1Q8TEB9 315 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 MS4A3Q96HJ5 214 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 TMEM246Q9BRR3 403 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 C20orf85Q9H1P6 137 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 OR51J1Q9H342 316 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 ZNF275Q9NSD4 429 aaPredicted RBP18.02■□□□□ 0.48
CLN3-230ENST00000568076 FLVCR2Q9UPI3 526 aa18.02■□□□□ 0.48
CLN3-230ENST00000568076 LOC100289279A0A1B0GTE1 492 aa18.02■□□□□ 0.47
CLN3-230ENST00000568076 TMEM272A0A1B0GTI8 110 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms