RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ING1Q9UK53 422 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 PILRBQ9UKJ0 227 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 SLC22A13Q9Y226 551 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 THADAQ6YHU6 1953 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CPAMD8Q8IZJ3 1885 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 TRAV18A0A075B6X5 111 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 TMEM269A0A1B0GVZ9 245 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 LINC00862A6NCI5 91 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 C19orf67A6NJJ6 358 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 AQP7P3A6NL99 342 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ZNF878C9JN71 531 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SMLR1H3BR10 107 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MEN1O00255 615 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 NTN3O00634 580 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 AKR7A2O43488 359 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 TRAF3IP2O43734 574 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 OR2A4O95047 310 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 WISP1O95388 367 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 BPNT1O95861 308 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 IGHEP01854 428 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 HPXP02790 462 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CD74P04233 296 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ERCC1P07992 297 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 CD63P08962 238 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 PGA4P0DJD7 388 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 PGA3P0DJD8 388 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 TDGF1P13385 188 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CXCL3P19876 107 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MPZP25189 248 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 BDKRB2P30411 391 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 HOXD11P31277 338 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 HTR2BP41595 481 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 RAD52P43351 418 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 P2RY4P51582 365 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 BIDP55957 195 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CLRN1P58418 232 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ZP1P60852 638 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 PSMA6P60900 246 aaKnown RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 SLC35A1P78382 337 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MYBPHQ13203 477 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 PCOLCEQ15113 449 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MPPED2Q15777 294 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 FAM189A2Q15884 450 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 PCGF3Q3KNV8 242 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 TMEM255AQ5JRV8 349 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ZBTB37Q5TC79 503 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 FAM69BQ5VUD6 431 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SLC25A47Q6Q0C1 308 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OPN5Q6U736 354 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ARSKQ6UWY0 536 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 C16orf47Q6ZP98 133 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 Q6ZTK2 550 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 NLRC3Q7RTR2 1065 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ELMOD2Q8IZ81 293 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MEIOBQ8N635 442 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SLC38A9Q8NBW4 561 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 UXS1Q8NBZ7 420 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CLEC1AQ8NC01 280 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CCDC54Q8NEL0 328 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OR10G3Q8NGC4 313 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OR4K17Q8NGC6 315 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OR4C16Q8NGL9 310 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 M1APQ8TC57 530 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 IFI44Q8TCB0 444 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CCDC107Q8WV48 283 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 GCDHQ92947 438 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 SNAPC3Q92966 411 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MARVELD3Q96A59 401 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 NTNG2Q96CW9 530 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SLAMF6Q96DU3 332 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OXGR1Q96P68 337 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SORCS2Q96PQ0 1159 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 OR2A7Q96R45 310 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 RASL10BQ96S79 203 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 SLC25A21Q9BQT8 299 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 GINS4Q9BRT9 223 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ULBP3Q9BZM4 244 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ZNF700Q9H0M5 742 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 ATG5Q9H1Y0 275 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CLEC4MQ9H2X3 399 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 NKIRAS2Q9NYR9 191 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 MRPL15Q9P015 296 aaKnown RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 MGAT4CQ9UBM8 478 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CYB5R1Q9UHQ9 305 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 GPN3Q9UHW5 284 aaPredicted RBP5.58□□□□□ -1.52
CLN3-223ENST00000566472 RAB22AQ9UL26 194 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 GTF2A1LQ9UNN4 478 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 VDAC3Q9Y277 283 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 EMC9Q9Y3B6 208 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 RHBDD3Q9Y3P4 386 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 CHD7Q9P2D1 2997 aa5.58□□□□□ -1.52
CLN3-223ENST00000566472 IGKV1D-43A0A0B4J1Z2 117 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 OR2M5A3KFT3 312 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 METTL21EPA6NDL7 271 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 C9J4A7 227 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 D6RAR5 112 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 G3V3Q6 166 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 H0YC42 278 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 ERVH48-1M5A8F1 160 aa5.57□□□□□ -1.52
CLN3-223ENST00000566472 TNFRSF10AO00220 468 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms