RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ARMCX1Q9P291 453 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 TMEM5Q9Y2B1 443 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 A0A087WUU8 490 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 ISPDA4D126 451 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 TRIM77I1YAP6 450 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 AVPP01185 164 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 TNFSF4P23510 183 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 ACTG1P63261 375 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 CDK5R2Q13319 367 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 ZBED5Q49AG3 693 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 CBLL1Q75N03 491 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 CYP4Z1Q86W10 505 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 POU5F2Q8N7G0 328 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 ST7LQ8TDW4 575 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 FAM216AQ8WUB2 273 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 COG8Q96MW5 612 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 SUCNR1Q9BXA5 334 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 MSL2Q9HCI7 577 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 ADAM18Q9Y3Q7 739 aa15.86■□□□□ 0.13
CLN3-218ENST00000565688 PRSS37A4D1T9 235 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 H7C1C5 153 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 NDUFAB1O14561 156 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 SGCEO43556 437 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 DOK2O60496 412 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 PRSS23O95084 383 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 GPR4P46093 362 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 HTR5AP47898 357 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 LCN6P62502 163 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 TNFAIP6P98066 277 aaPredicted RBP15.85■□□□□ 0.13
CLN3-218ENST00000565688 PSG7Q13046 419 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 TBPL2Q6SJ96 375 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 HSH2DQ96JZ2 352 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 ZNF570Q96NI8 536 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 RBM4Q9BWF3 364 aaKnown RBP15.85■□□□□ 0.13
CLN3-218ENST00000565688 CCDC134Q9H6E4 229 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 EMC7Q9NPA0 242 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 UBAP1Q9NZ09 502 aa15.85■□□□□ 0.13
CLN3-218ENST00000565688 PPIAL4EA0A075B759 164 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 PPIAL4CA0A0B4J2A2 164 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 TEX13CA0A0J9YWL9 993 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 PPIAL4DF5H284 164 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 CDC42EP2O14613 210 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 RGS9O75916 674 aaPredicted RBP15.84■□□□□ 0.13
CLN3-218ENST00000565688 SERPINA1P01009 418 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 SCG5P05408 212 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 PPIAL4FP0DN26 164 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 COX4I1P13073 169 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 TNFRSF1AP19438 455 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 CFPP27918 469 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 LIMS1P48059 325 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 COMPP49747 757 aaPredicted RBP15.84■□□□□ 0.13
CLN3-218ENST00000565688 SLC7A2P52569 658 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 MESTQ5EB52 335 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 GCDHQ92947 438 aaPredicted RBP15.84■□□□□ 0.13
CLN3-218ENST00000565688 Q96M85 177 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 C7orf69Q9H7B7 122 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 EFCAB1Q9HAE3 211 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 NMNAT1Q9HAN9 279 aaPredicted RBP15.84■□□□□ 0.13
CLN3-218ENST00000565688 GMPR2Q9P2T1 348 aaKnown RBP15.84■□□□□ 0.13
CLN3-218ENST00000565688 NPTNQ9Y639 398 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 WNK2Q9Y3S1 2297 aa15.84■□□□□ 0.13
CLN3-218ENST00000565688 NME4O00746 187 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 SURF4O15260 269 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 CCDC22O60826 627 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 FOXH1O75593 365 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 KITLGP21583 273 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 LCN2P80188 198 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 AQP6Q13520 282 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 GPR139Q6DWJ6 353 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 VASH1Q7L8A9 365 aaPredicted RBP15.83■□□□□ 0.12
CLN3-218ENST00000565688 FAM122BQ7Z309 247 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 BPIFB2Q8N4F0 458 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 SPICQ8N5J4 248 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 SAMD8Q96LT4 415 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 PLEK2Q9NYT0 353 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 PURGQ9UJV8 347 aaKnown RBP15.83■□□□□ 0.12
CLN3-218ENST00000565688 ENPP4Q9Y6X5 453 aa15.83■□□□□ 0.12
CLN3-218ENST00000565688 TANC2Q9HCD6 1990 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 A0A1W2PRQ8 180 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 J3QW42 95 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 NDUFB2O95178 105 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 IGHV2-70P01814 119 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 CTLA4P16410 223 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 ZNF26P17031 533 aaPredicted RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 ADRA2CP18825 462 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 FPR2P25090 351 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 SDHAP31040 664 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 GSK3BP49841 420 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 LSM6P62312 80 aaKnown RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 GUCY1A3Q02108 690 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 KRR1Q13601 381 aaKnown RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 DGCR6Q14129 220 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 C8orf82Q6P1X6 216 aaPredicted RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 HACD2Q6Y1H2 254 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 ZNF771Q7L3S4 317 aaPredicted RBP15.82■□□□□ 0.12
CLN3-218ENST00000565688 GLB1L2Q8IW92 636 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 KLHL36Q8N4N3 616 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 OR2Z1Q8NG97 314 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 SLC7A13Q8TCU3 470 aa15.82■□□□□ 0.12
CLN3-218ENST00000565688 FAM162AQ96A26 154 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms