RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMPRSS11FQ6ZWK6 438 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 MBOAT2Q6ZWT7 520 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 SLC15A3Q8IY34 581 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 GEMIN6Q8WXD5 167 aaKnown RBP14.47□□□□□ -0.09
CLN3-216ENST00000565316 PLA2G12AQ9BZM1 189 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 H7C1C5 153 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 CDC42EP2O14613 210 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 ABHD16AO95870 558 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 IGHV2-70P01814 119 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 CD14P08571 375 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 KITLGP21583 273 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 ZFP36P26651 326 aaKnown RBP14.46□□□□□ -0.09
CLN3-216ENST00000565316 LIMS1P48059 325 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 LCN6P62502 163 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 TNFAIP6P98066 277 aaPredicted RBP14.46□□□□□ -0.09
CLN3-216ENST00000565316 TUSC1Q2TAM9 212 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 TBPL2Q6SJ96 375 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 ZNF730Q6ZMV8 503 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 FAM122BQ7Z309 247 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 ARPINQ7Z6K5 226 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 NPEPL1Q8NDH3 523 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 RCN3Q96D15 328 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 SLC6A7Q99884 636 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 POFUT1Q9H488 388 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 C7orf69Q9H7B7 122 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 EMC7Q9NPA0 242 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 DCAF16Q9NXF7 216 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 ADAM18Q9Y3Q7 739 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 NPTNQ9Y639 398 aa14.46□□□□□ -0.09
CLN3-216ENST00000565316 TANC2Q9HCD6 1990 aa14.46□□□□□ -0.1
CLN3-216ENST00000565316 ISPDA4D126 451 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 TIMM8AO60220 97 aaPredicted RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 GSTM3P21266 225 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 LCN2P80188 198 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 LIPEQ05469 1076 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 SCRN3Q0VDG4 424 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 SF3A3Q12874 501 aaKnown RBP eCLIP14.45□□□□□ -0.1
CLN3-216ENST00000565316 ZBED5Q49AG3 693 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 MESTQ5EB52 335 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 Q6ZR03 302 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 CBLL1Q75N03 491 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 TSEN54Q7Z6J9 526 aaKnown RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 ZNF283Q8N7M2 679 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 RP9Q8TA86 221 aaKnown RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 GCDHQ92947 438 aaPredicted RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 DVL3Q92997 716 aaPredicted RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 SAMD8Q96LT4 415 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 Q96M85 177 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 ANKRD19PQ9H560 264 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 ESM1Q9NQ30 184 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 TMEM106BQ9NUM4 274 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 GRHPRQ9UBQ7 328 aa14.45□□□□□ -0.1
CLN3-216ENST00000565316 PURGQ9UJV8 347 aaKnown RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 POLR3KQ9Y2Y1 108 aaPredicted RBP14.45□□□□□ -0.1
CLN3-216ENST00000565316 TEX13CA0A0J9YWL9 993 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 PRSS37A4D1T9 235 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 CXCR6O00574 342 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 SGCEO43556 437 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 PTP4A3O75365 173 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 FOXH1O75593 365 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ZNF682O95780 498 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 CTLA4P16410 223 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 RPL4P36578 427 aaKnown RBP14.44□□□□□ -0.1
CLN3-216ENST00000565316 GPR4P46093 362 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 IFI44LQ53G44 452 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 C8orf82Q6P1X6 216 aaPredicted RBP14.44□□□□□ -0.1
CLN3-216ENST00000565316 VASH1Q7L8A9 365 aaPredicted RBP14.44□□□□□ -0.1
CLN3-216ENST00000565316 TREML1Q86YW5 311 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 POU5F2Q8N7G0 328 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ZDHHC22Q8N966 263 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ST7LQ8TDW4 575 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 HAVCR1Q96D42 359 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ZMYND19Q96E35 227 aaPredicted RBP14.44□□□□□ -0.1
CLN3-216ENST00000565316 HSH2DQ96JZ2 352 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 NMNAT1Q9HAN9 279 aaPredicted RBP14.44□□□□□ -0.1
CLN3-216ENST00000565316 UBAP1Q9NZ09 502 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ARMCX1Q9P291 453 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 STARD10Q9Y365 291 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 ARHGAP32A7KAX9 2087 aa14.44□□□□□ -0.1
CLN3-216ENST00000565316 OR6C6A6NF89 314 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 NME4O00746 187 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 XKRYO14609 159 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 DOK2O60496 412 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 TNFSF4P23510 183 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 HTR5AP47898 357 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 LSM6P62312 80 aaKnown RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 HNRNPA0Q13151 305 aaKnown RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 TMEM155Q4W5P6 130 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 ZNF771Q7L3S4 317 aaPredicted RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 LRRC28Q86X40 367 aaPredicted RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 BPIFB2Q8N4F0 458 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 SPICQ8N5J4 248 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 DEFB108BQ8NET1 73 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 SLC7A13Q8TCU3 470 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 CMBLQ96DG6 245 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 COG8Q96MW5 612 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 HOPXQ9BPY8 73 aaPredicted RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 VSX1Q9NZR4 365 aaPredicted RBP14.43□□□□□ -0.1
CLN3-216ENST00000565316 TMEM5Q9Y2B1 443 aa14.43□□□□□ -0.1
CLN3-216ENST00000565316 DYSFO75923 2080 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms