RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ACTA1P68133 377 aa18■□□□□ 0.47
CLN3-212ENST00000564574 TAB1Q15750 504 aa18■□□□□ 0.47
CLN3-212ENST00000564574 OTPQ5XKR4 325 aa18■□□□□ 0.47
CLN3-212ENST00000564574 LINC00346Q8IVM7 164 aa18■□□□□ 0.47
CLN3-212ENST00000564574 ZNF786Q8N393 782 aa18■□□□□ 0.47
CLN3-212ENST00000564574 OR4F15Q8NGB8 312 aa18■□□□□ 0.47
CLN3-212ENST00000564574 GGHQ92820 318 aa18■□□□□ 0.47
CLN3-212ENST00000564574 C1orf198Q9H425 327 aa18■□□□□ 0.47
CLN3-212ENST00000564574 FGF20Q9NP95 211 aaPredicted RBP18■□□□□ 0.47
CLN3-212ENST00000564574 NPDC1Q9NQX5 325 aaPredicted RBP18■□□□□ 0.47
CLN3-212ENST00000564574 PSORS1C1Q9UIG5 152 aa18■□□□□ 0.47
CLN3-212ENST00000564574 LAMP5Q9UJQ1 280 aa18■□□□□ 0.47
CLN3-212ENST00000564574 GDF2Q9UK05 429 aaPredicted RBP18■□□□□ 0.47
CLN3-212ENST00000564574 ZNF503-AS2A6NEH8 195 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 ZNF670-ZNF695F2Z2N8 137 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 J3QRE1 110 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 XPNPEP2O43895 674 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 LYNP07948 512 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 TUBA1BP68363 451 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 TUBA4AP68366 448 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 EIF2B1Q14232 305 aaKnown RBP17.99■□□□□ 0.47
CLN3-212ENST00000564574 C3orf36Q3SXR2 165 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 TUBA1AQ71U36 451 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 DCXRQ7Z4W1 244 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 MDP1Q86V88 176 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 ALDH16A1Q8IZ83 802 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 FGFBP3Q8TAT2 258 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 IPCEF1Q8WWN9 437 aaPredicted RBP17.99■□□□□ 0.47
CLN3-212ENST00000564574 MYCBPQ99417 103 aaPredicted RBP17.99■□□□□ 0.47
CLN3-212ENST00000564574 MED18Q9BUE0 208 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 OR2H1Q9GZK4 316 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 INPP5EQ9NRR6 644 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 FKBP14Q9NWM8 211 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 CRNNQ9UBG3 495 aaPredicted RBP17.99■□□□□ 0.47
CLN3-212ENST00000564574 PCDHGB5Q9Y5G0 923 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 RELNP78509 3460 aa17.99■□□□□ 0.47
CLN3-212ENST00000564574 SPTBN1Q01082 2364 aaKnown RBP17.98■□□□□ 0.47
CLN3-212ENST00000564574 A0A1W2PR80 420 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 SGCEO43556 437 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 PTHP01270 115 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 PATE4P0C8F1 98 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 PSKH1P11801 424 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 ALOX5APP20292 161 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 DCKP27707 260 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 RPS27P42677 84 aaKnown RBP17.98■□□□□ 0.47
CLN3-212ENST00000564574 PSG4Q00888 419 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 PLP2Q04941 152 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 PIGFQ07326 219 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 RAB35Q15286 201 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 CORO6Q6QEF8 472 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 RHOUQ7L0Q8 258 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 ZNF540Q8NDQ6 660 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 OR52I1Q8NGK6 324 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 ST7LQ8TDW4 575 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 ASB17Q8WXJ9 295 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 DACH2Q96NX9 599 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 WFIKKN1Q96NZ8 548 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 JAM3Q9BX67 310 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 HDHD2Q9H0R4 259 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 WNT5BQ9H1J7 359 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 NGBQ9NPG2 151 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 ATPIF1Q9UII2 106 aa17.98■□□□□ 0.47
CLN3-212ENST00000564574 TUBAL3A6NHL2 446 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 RER1O15258 196 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 APOL3O95236 402 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 IGKV3-15P01624 115 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 IGHA1P01876 353 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 COX5BP10606 129 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 CRHBPP24387 322 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 CCDC92Q53HC0 331 aaPredicted RBP17.97■□□□□ 0.47
CLN3-212ENST00000564574 PABPC1L2AQ5JQF8 200 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 ELFN2Q5R3F8 820 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 KCTD18Q6PI47 426 aaPredicted RBP17.97■□□□□ 0.47
CLN3-212ENST00000564574 ACBD7Q8N6N7 88 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 OR10H4Q8NGA5 316 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 MYDGFQ969H8 173 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 TMEM80Q96HE8 168 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 ZNF75AQ96N20 296 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 ABHD6Q9BV23 337 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 NOX3Q9HBY0 568 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 SLC24A3Q9HC58 644 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 PLEK2Q9NYT0 353 aa17.97■□□□□ 0.47
CLN3-212ENST00000564574 DIMT1Q9UNQ2 313 aaKnown RBP17.97■□□□□ 0.47
CLN3-212ENST00000564574 DOPEY1Q5JWR5 2465 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 IQCMA0A1B0GVH7 501 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 DOK2O60496 412 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 THBDP07204 575 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 IGFBP2P18065 325 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 GABARAPL2P60520 117 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 ECH1Q13011 328 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 CFAP77Q6ZQR2 320 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 AHSA2Q719I0 299 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 VASH1Q7L8A9 365 aaPredicted RBP17.96■□□□□ 0.47
CLN3-212ENST00000564574 STX19Q8N4C7 294 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 THEM6Q8WUY1 208 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 RNF133Q8WVZ7 376 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 SLAMF6Q96DU3 332 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 MRPL48Q96GC5 212 aaKnown RBP17.96■□□□□ 0.47
CLN3-212ENST00000564574 MAP6Q96JE9 813 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 COQ7Q99807 217 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms