RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MAP3K8P41279 467 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 GDF5P43026 501 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 NUP107P57740 925 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 AP3S2P59780 193 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 ZP1P60852 638 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 RPL26P61254 145 aaKnown RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 AP1S1P61966 158 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 POU3F1Q03052 451 aaPredicted RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 BCL2L1Q07817 233 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 C2orf80Q0P641 193 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 RIGQ13278 110 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 SLC17A1Q14916 467 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 MAD2L1BPQ15013 274 aaPredicted RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 C5orf64Q2M2E5 130 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 PRTGQ2VWP7 1150 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 ADAM5Q6NVV9 412 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 GFRALQ6UXV0 394 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 LEKR1Q6ZMV7 388 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 SLC25A48Q6ZT89 311 aaKnown RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 FCRLAQ7L513 359 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 OR2W3Q7Z3T1 314 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 NUFIP2Q7Z417 695 aaKnown RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 TMEM219Q86XT9 240 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 TMEM25Q86YD3 366 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 FBXL14Q8N1E6 418 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 KIF2BQ8N4N8 673 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 MREGQ8N565 214 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 OR1S2Q8NGQ3 325 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 OR6N2Q8NGY6 317 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 MRAPQ8TCY5 172 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 FAF2Q96CS3 445 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 WWC2-AS2Q96NR7 200 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 DCUN1D5Q9BTE7 237 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 TOLLIPQ9H0E2 274 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 SP140LQ9H930 580 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 VCX3AQ9NNX9 186 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 AURKAIP1Q9NWT8 199 aaPredicted RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 B4GALT7Q9UBV7 327 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF282Q9UDV7 671 aaPredicted RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 MMP17Q9ULZ9 603 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 RPL26L1Q9UNX3 145 aaKnown RBP4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 PPP2R2CQ9Y2T4 447 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 OARD1Q9Y530 152 aa4.42□□□□□ -1.7
VPS35P1-201ENST00000563400 A0A1W2PRF3 423 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 A0A1W2PRM7 423 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TVP23AA6NH52 213 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 H7C0C1 242 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 APOC4-APOC2K7ER74 178 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 DFFAO00273 331 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GOSR2O14653 212 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SGCEO43556 437 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 NADKO95544 446 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ANGPTL1O95841 491 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 APOC2P02655 101 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RPS17P08708 135 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 HOXD3P31249 432 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SAA4P35542 130 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PRLHRP49683 370 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RPL14P50914 215 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CEBPGP53567 150 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 DCDC1P59894 354 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RHOAP61586 193 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GNG11P61952 73 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MRPS22P82650 360 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ID2Q02363 134 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SRSF1Q07955 248 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RBBP4Q09028 425 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RAB40BQ12829 278 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 FOXI1Q12951 378 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 EIF4EBP2Q13542 120 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RAB35Q15286 201 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 INPP5JQ15735 1006 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TRMT5Q32P41 509 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CARD16Q5EG05 197 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ADAMTSL5Q6ZMM2 481 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 Q6ZTK2 550 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 AHSA2Q719I0 299 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF547Q8IVP9 402 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PGBD5Q8N414 524 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ZSCAN4Q8NAM6 433 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SLC16A11Q8NCK7 471 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 C19orf18Q8NEA5 215 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 OR5B3Q8NH48 314 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 FBXO25Q8TCJ0 367 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RAB3CQ96E17 227 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CENPNQ96H22 339 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CELF6Q96J87 481 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 DNAJC1Q96KC8 554 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RNF157Q96PX1 679 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RANBP9Q96S59 729 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TIMM29Q9BSF4 260 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RSG1Q9BU20 258 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CCDC28BQ9BUN5 200 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF426Q9BUY5 554 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MMP28Q9H239 520 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 LINC00597Q9H2U6 94 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CENPHQ9H3R5 247 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TRABDQ9H4I3 376 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 THAP10Q9P2Z0 257 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms