RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RGS21Q2M5E4 152 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 CTU2Q2VPK5 515 aaKnown RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 SOWAHCQ53LP3 525 aaPredicted RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 PLA2G2CQ5R387 149 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ZNF782Q6ZMW2 699 aaPredicted RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 TOMM5Q8N4H5 51 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 OR52I1Q8NGK6 324 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 CASTOR1Q8WTX7 329 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ABHD6Q9BV23 337 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 HINT2Q9BX68 163 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 DNTTIP1Q9H147 329 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ENAMQ9NRM1 1142 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 GPR173Q9NS66 373 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 GDF2Q9UK05 429 aaPredicted RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 PLCE1Q9P212 2302 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 FFAR1O14842 300 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ZNF432O94892 652 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 IGKV3-11P04433 115 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 CDKN2AP42771 156 aaKnown RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 CSRP3P50461 194 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 MRGPRGQ86SM5 289 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ZNF454Q8N9F8 522 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 OR4Q3Q8NH05 313 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 MCHR2Q969V1 340 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 FAM131CQ96AQ9 280 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 GPR84Q9NQS5 396 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 QPCTLQ9NXS2 382 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 KCNE5Q9UJ90 142 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TAF4O00268 1085 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 FAM189A2Q15884 450 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 FRMPD3Q5JV73 1810 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 OLFML2AQ68BL7 652 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 C2orf16Q68DN1 1984 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF774Q6NX45 483 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TMEM81Q6P7N7 255 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TMPRSS11FQ6ZWK6 438 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 SLC16A9Q7RTY1 509 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TMEM17Q86X19 198 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PPP1R35Q8TAP8 253 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PAQR8Q8TEZ7 354 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF764Q96H86 408 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 SIGLEC11Q96RL6 698 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 NKX3-1Q99801 234 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 ST6GALNAC5Q9BVH7 336 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 RNF32Q9H0A6 362 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 MEPEQ9NQ76 525 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 COMMD9Q9P000 198 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF281Q9Y2X9 895 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 A0A0G2JMM0 328 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 A0A1W2PPB8 328 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 A0A1W2PRS3 328 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 FAM172BPA6NC97 362 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 KIR3DP1A8MWS1 328 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 SHC1P29353 583 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 C21orf58P58505 322 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ADARB1P78563 741 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 KLRB1Q12918 225 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF718Q3SXZ3 478 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CHRFAM7AQ494W8 412 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 C4orf46Q504U0 113 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 HIKESHIQ53FT3 197 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PABPC1L2AQ5JQF8 200 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ATG4DQ86TL0 474 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 OR11L1Q8NGX0 322 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 OR2AE1Q8NHA4 323 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TBC1D15Q8TC07 691 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 MUL1Q969V5 352 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CTHRC1Q96CG8 243 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 IMMP1LQ96LU5 166 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 SLC6A7Q99884 636 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CHRNA10Q9GZZ6 450 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CGGBP1Q9UFW8 167 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 LIPT2A6NK58 231 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 SLC19A2O60779 497 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 NCR1O76036 304 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 DHFRP00374 187 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PSKH1P11801 424 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 GTF2F2P13984 249 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ARSBP15848 533 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 NDUFB7P17568 137 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TNFSF10P50591 281 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 MVDP53602 400 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 FXYD4P59646 89 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 RIPPLY1Q0D2K3 151 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 IKZF1Q13422 519 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 RBM39Q14498 530 aaKnown RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 RAB35Q15286 201 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 PLPPR5Q32ZL2 321 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 CDNFQ49AH0 187 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TSPO2Q5TGU0 170 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 KCTD20Q7Z5Y7 419 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 OR10K1Q8NGX5 313 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TOMM40LQ969M1 308 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 ISOC1Q96CN7 298 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 FCRL1Q96LA6 429 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TP63Q9H3D4 680 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 ZNF552Q9H707 407 aaPredicted RBP8.25□□□□□ -1.09
VPS39-205ENST00000562258 SMURF1Q9HCE7 757 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 IL20Q9NYY1 176 aa8.25□□□□□ -1.09
VPS39-205ENST00000562258 TREM2Q9NZC2 230 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms