RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 LPAR2Q9HBW0 351 aa4.6□□□□□ -1.67
RTF1-204ENST00000558117 MYOZ1Q9NP98 299 aaPredicted RBP4.6□□□□□ -1.67
RTF1-204ENST00000558117 HOMER3Q9NSC5 361 aa4.6□□□□□ -1.67
RTF1-204ENST00000558117 RBM22Q9NW64 420 aaKnown RBP eCLIP4.6□□□□□ -1.67
RTF1-204ENST00000558117 RUVBL2Q9Y230 463 aaKnown RBP4.6□□□□□ -1.67
RTF1-204ENST00000558117 CHTOPQ9Y3Y2 248 aaKnown RBP4.6□□□□□ -1.67
RTF1-204ENST00000558117 FKBP7Q9Y680 259 aa4.6□□□□□ -1.67
RTF1-204ENST00000558117 HSPG2P98160 4391 aa4.6□□□□□ -1.67
RTF1-204ENST00000558117 IGKV1-8A0A0C4DH67 115 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 A0A1W2PPV9 198 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 TXNDC9O14530 226 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 KIF5CO60282 957 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 REM1O75628 298 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 MYO1DO94832 1006 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 MFN2O95140 757 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 HLA-DQB2P05538 268 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 TPM1P09493 284 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 ATP1B2P14415 290 aaPredicted RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 RPA2P15927 270 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 PSMB1P20618 241 aaKnown RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 ZNF10P21506 573 aaPredicted RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 ADRA1AP35348 466 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 HCAR3P49019 387 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 ACTR3P61158 418 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 CCZ1BP86790 482 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 CCZ1P86791 482 aaPredicted RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 MSLNQ13421 630 aaPredicted RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 TAB1Q15750 504 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 ARFGEF3Q5TH69 2177 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 ADNP2Q6IQ32 1131 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 OPN5Q6U736 354 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 CD164L2Q6UWJ8 174 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 FAM159AQ6UWV7 190 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 EGFL6Q8IUX8 553 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 FAM71AQ8IYT1 594 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 OR5T3Q8NGG3 340 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 NANPQ8TBE9 248 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 MCOLN3Q8TDD5 553 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 FCGR1BQ92637 280 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 NDNQ99608 321 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 CHP1Q99653 195 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 CAPS2Q9BXY5 557 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 MRPL13Q9BYD1 178 aaKnown RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 GPR61Q9BZJ8 451 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 DHX35Q9H5Z1 703 aaKnown RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 RRAGDQ9NQL2 400 aaPredicted RBP4.59□□□□□ -1.67
RTF1-204ENST00000558117 BAIAP2L1Q9UHR4 511 aa4.59□□□□□ -1.67
RTF1-204ENST00000558117 A0A087WUV0 522 aaPredicted RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 GOLGA8QA0A0J9YX86 632 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GOLGA8OA6NCC3 632 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ZNF716A6NP11 495 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 E9PQ18 207 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 F8VVB4 439 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 F8VWA3 439 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GOLGA8NF8WBI6 632 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GOLGA8RI6L899 631 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 LGALS8O00214 317 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 RHBDL1O75783 438 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 NDUFA7O95182 113 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 LRATO95237 230 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ZNF735P0CB33 412 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 RPL35AP18077 110 aaKnown RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 TNNI3P19429 210 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 PGCP20142 388 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ATP6V1C1P21283 382 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 PAX7P23759 505 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 FCGR2BP31994 310 aaPredicted RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 FABP6P51161 128 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 PRRX1P54821 245 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GUCY2DQ02846 1103 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ZP4Q12836 540 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 DOC2AQ14183 400 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 EFTUD2Q15029 972 aaKnown RBP eCLIP4.58□□□□□ -1.685e-7■■■■□ 26.2
RTF1-204ENST00000558117 EXOC3L4Q17RC7 722 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ZFAND6Q6FIF0 208 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 P4HA3Q7Z4N8 544 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GPR141Q7Z602 305 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 YRDCQ86U90 279 aaKnown RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 PIANPQ8IYJ0 282 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 LRTM2Q8N967 370 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 CCDC63Q8NA47 563 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 OR8K1Q8NGG5 319 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 OR52K1Q8NGK4 314 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 AKR7LQ8NHP1 331 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 RERGQ96A58 199 aaPredicted RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 PYCR2Q96C36 320 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 DCUN1D1Q96GG9 259 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 FAM218AQ96MZ4 157 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 ERGIC2Q96RQ1 377 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 PYGO2Q9BRQ0 406 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 DOHHQ9BU89 302 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 GANQ9H2C0 597 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 YY1AP1Q9H869 796 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 PSME2Q9UL46 239 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 TFR2Q9UP52 801 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 C15orf41Q9Y2V0 281 aa4.58□□□□□ -1.68
RTF1-204ENST00000558117 CHCHD2Q9Y6H1 151 aaPredicted RBP4.58□□□□□ -1.68
RTF1-204ENST00000558117 TRBV4-1A0A0J9YWV2 114 aa4.57□□□□□ -1.68
RTF1-204ENST00000558117 ZNF860A6NHJ4 632 aa4.57□□□□□ -1.68
RTF1-204ENST00000558117 SLC22A20A6NK97 555 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms