RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ECSITQ9BQ95 431 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 PIGUQ9H490 435 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 MS4A12Q9NXJ0 267 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 CALYQ9NYX4 217 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 CCDC59Q9P031 241 aaKnown RBP2.36□□□□□ -2.03
TRAV28-201ENST00000557548 DUX4Q9UBX2 424 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 BTNL2Q9UIR0 455 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 GNPTGQ9UJJ9 305 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 CFL2Q9Y281 166 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 CDH10Q9Y6N8 788 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 IFT140Q96RY7 1462 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 FANCIQ9NVI1 1328 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 ABCC8Q09428 1581 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 DIP2BQ9P265 1576 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 MSH6P52701 1360 aa2.36□□□□□ -2.03
TRAV28-201ENST00000557548 POGZQ7Z3K3 1410 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 AK9Q5TCS8 1911 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SNAPC4Q5SXM2 1469 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PLB1Q6P1J6 1458 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ZNF816-ZNF321PA0A0X1KG74 233 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 A0A1W2PRD5 423 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SMIM23A6NLE4 172 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 MRPS12O15235 138 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 RAD51BO15315 384 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 COCHO43405 550 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 EIF3GO75821 320 aaKnown RBP eCLIP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 IGHV3-23P01764 117 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 KRT7P08729 469 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 KRT16P08779 473 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 MLNP12872 115 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 FOLR1P15328 257 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ZNF250P15622 560 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CTRB1P17538 263 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CMA1P23946 247 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 OR1E1P30953 314 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 FMO3P31513 532 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 BTCP35070 178 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PCK1P35558 622 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 NBL1P41271 181 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 BTDP43251 543 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CDC34P49427 236 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CEBPGP53567 150 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SUB1P53999 127 aaKnown RBP eCLIP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 RAB14P61106 215 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 RPS15AP62244 130 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ADARB1P78563 741 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 LCN2P80188 198 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SLC25A11Q02978 314 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ZNF92Q03936 586 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PMS2P3Q13401 168 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ORC2Q13416 577 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TRAM2Q15035 370 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 KCTD19Q17RG1 926 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 DNAL1Q4LDG9 190 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PRR30Q53SZ7 412 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CEP85LQ5SZL2 805 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 MARC1Q5VT66 337 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 RNLSQ5VYX0 342 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CTRB2Q6GPI1 263 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ULK3Q6PHR2 472 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TTC33Q6PID6 262 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SPESP1Q6UW49 350 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TFAP2EQ6VUC0 442 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SLC35D2Q76EJ3 337 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PAGE2Q7Z2X7 111 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 AKAP14Q86UN6 197 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 APRG1Q8IVJ8 170 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ARHGAP18Q8N392 663 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TRAM1L1Q8N609 369 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 OR4D6Q8NGJ1 314 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 OR2L2Q8NH16 312 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 OR5K2Q8NHB8 316 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 NUBPLQ8TB37 319 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ARPC1AQ92747 370 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 GTF2H4Q92759 462 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 FRAT1Q92837 279 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TMEM54Q969K7 222 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 APH1AQ96BI3 265 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 CCDC127Q96BQ5 260 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 C1orf147Q96MC9 270 aaPredicted RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ARHGDIGQ99819 225 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 EBF4Q9BQW3 602 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 C7orf50Q9BRJ6 194 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 MED10Q9BTT4 135 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PAXXQ9BUH6 204 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 TSGA10Q9BZW7 698 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ZYG11BQ9C0D3 744 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 POLR2J2Q9GZM3 115 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 POLR2J3Q9H1A7 115 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 OR51V1Q9H2C8 321 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 NXF3Q9H4D5 531 aaKnown RBP2.35□□□□□ -2.03
TRAV28-201ENST00000557548 SIAEQ9HAT2 523 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 NTN4Q9HB63 628 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ACP6Q9NPH0 428 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ZC4H2Q9NQZ6 224 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 EXD2Q9NVH0 621 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 AIG1Q9NVV5 245 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 ADA2Q9NZK5 511 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 PAK5Q9P286 719 aa2.35□□□□□ -2.03
TRAV28-201ENST00000557548 LGALS13Q9UHV8 139 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms