RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 SNX33Q8WV41 574 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 ZNF837Q96EG3 531 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-210ENST00000553950 FOXN4Q96NZ1 517 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 ALG8Q9BVK2 526 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 NIPAL2Q9H841 368 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 EMC7Q9NPA0 242 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 ERVK13-1Q9NX77 482 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 SCOCQ9UIL1 159 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 GDF2Q9UK05 429 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-210ENST00000553950 CAB39Q9Y376 341 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-210ENST00000553950 PCNX1Q96RV3 2341 aa12.72□□□□□ -0.37
SHMT2-210ENST00000553950 A0A1W2PQL4 384 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-210ENST00000553950 SULT1C4O75897 302 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 LYZL6O75951 148 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 SEC14L2O76054 403 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 APOL3O95236 402 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 MPZL1O95297 269 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 GPANK1O95872 356 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 APOC1P02654 83 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 MT-ND2P03891 347 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 TACSTD2P09758 323 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ALOX5APP20292 161 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 PEX19P40855 299 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 TAS2R43P59537 309 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 GRB2P62993 217 aaKnown RBP12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ECH1Q13011 328 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 IGFBP7Q16270 282 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 GABRA6Q16445 453 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 TIMM23BQ5SRD1 257 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ZNF474Q6S9Z5 364 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ZNF322Q6U7Q0 402 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-210ENST00000553950 DCXRQ7Z4W1 244 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ALDH16A1Q8IZ83 802 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 LRRC18Q8N456 261 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 LILRB4Q8NHJ6 448 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 BCL2L2Q92843 193 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-210ENST00000553950 RHNO1Q9BSD3 238 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 MROQ9BYG7 248 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 ERVK-18Q9QC07 812 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 TIMM10BQ9Y5J6 103 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 LHFPL6Q9Y693 200 aa12.71□□□□□ -0.37
SHMT2-210ENST00000553950 CACNA1CQ13936 2221 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 OR5H1A6NKK0 313 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 SGCEO43556 437 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 DOK2O60496 412 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 MT-ND5P03915 603 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 RPSAP08865 295 aaKnown RBP12.7□□□□□ -0.38
SHMT2-210ENST00000553950 COX5BP10606 129 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 WNT4P56705 351 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 SORDQ00796 357 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ROM1Q03395 351 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 PLP2Q04941 152 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 GSG1Q2KHT4 349 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 CDONQ4KMG0 1287 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 STAC2Q6ZMT1 411 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 NCCRP1Q6ZVX7 275 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ZNF367Q7RTV3 350 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 KRT77Q7Z794 578 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 LINC00346Q8IVM7 164 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ZNF679Q8IYX0 411 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ST7LQ8TDW4 575 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 THEM6Q8WUY1 208 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 RNF133Q8WVZ7 376 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 RNASE6Q93091 150 aaKnown RBP12.7□□□□□ -0.38
SHMT2-210ENST00000553950 OR8B4Q96RC9 309 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 TBX5Q99593 518 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ATF6BQ99941 703 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 ABHD6Q9BV23 337 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 RNF121Q9H920 327 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 SLC17A5Q9NRA2 495 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 DDX28Q9NUL7 540 aaKnown RBP12.7□□□□□ -0.38
SHMT2-210ENST00000553950 PLEK2Q9NYT0 353 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 IKZF2Q9UKS7 526 aa12.7□□□□□ -0.38
SHMT2-210ENST00000553950 A0A096LPE4 126 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 IQCMA0A1B0GVH7 501 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 A0A1W2PPZ6 126 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 FAM90A27PA6NNH2 459 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 C16orf97H3BN30 126 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 CD79AP11912 226 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 ZNF32P17041 273 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 HSD11B1P28845 292 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 C21orf33P30042 268 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-210ENST00000553950 DCTDP32321 178 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 RIDAP52758 137 aaKnown RBP12.69□□□□□ -0.38
SHMT2-210ENST00000553950 HIST1H3AP68431 136 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 BDH1Q02338 343 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 ZNF85Q03923 595 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 IRF3Q14653 427 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 TAF13Q15543 124 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 ZNF829Q3KNS6 432 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-210ENST00000553950 ELFN2Q5R3F8 820 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 HIST2H3PS2Q5TEC6 136 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 HIST2H3AQ71DI3 136 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-210ENST00000553950 SKA3Q8IX90 412 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 SPARTQ8N0X7 666 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 FAM169BQ8N8A8 192 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 SPTSSAQ969W0 71 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 MUCL1Q96DR8 90 aa12.69□□□□□ -0.38
SHMT2-210ENST00000553950 SLAMF6Q96DU3 332 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms