RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GABREP78334 506 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 SPINK14Q6IE38 97 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 LRFN4Q6PJG9 635 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 CORO6Q6QEF8 472 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 ESPNLQ6ZVH7 1005 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 NRARPQ7Z6K4 114 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 TMPRSS12Q86WS5 348 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 OR4M2Q8NGB6 313 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 OR51A4Q8NGJ6 313 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 UCN2Q96RP3 112 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 NEURL2Q9BR09 285 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 SRXN1Q9BYN0 137 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 G6PC2Q9NQR9 355 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 RABL2AQ9UBK7 228 aaPredicted RBP23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 OR52A1Q9UKL2 312 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 RABL2BQ9UNT1 228 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 PCDHGA9Q9Y5G4 932 aaKnown RBP23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 CACNA1AO00555 2505 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 A0A0B4J203 849 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 LINC01387J3KSC0 135 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 SLC43A1O75387 559 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 HNRNPCP07910 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 GDF1P27539 372 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 CSNK1A1P48729 337 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 ODF4Q2M2E3 257 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 UBE2NLQ5JXB2 153 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 HES5Q5TA89 166 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 ZNF704Q6ZNC4 412 aaPredicted RBP23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 GGNQ86UU5 652 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 DTX1Q86Y01 620 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 OR2M7Q8NG81 312 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 LGALS14Q8TCE9 139 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 INTS12Q96CB8 462 aaKnown RBP23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 OR2M2Q96R28 347 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 SEC61A2Q9H9S3 476 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 CENPMQ9NSP4 180 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 FBXL3Q9UKT7 428 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 EMC9Q9Y3B6 208 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 IGHV3-15A0A0B4J1V0 119 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 PLA2G10O15496 165 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 SSX4O60224 188 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 ISG15P05161 165 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 CALCBP10092 127 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 ADRA2CP18825 462 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 ACHEP22303 614 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 MMP16P51512 607 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 MFAP5Q13361 173 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 C10orf128Q5T292 105 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 RHOUQ7L0Q8 258 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 CLEC1AQ8NC01 280 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 OR2AJ1Q8NGZ0 328 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 PNPLA2Q96AD5 504 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 WACQ9BTA9 647 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 GDF2Q9UK05 429 aaPredicted RBP23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 LHFPL6Q9Y693 200 aa23.37■■□□□ 1.33
CCDC88C-205ENST00000553403 TTLL8A6PVC2 850 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 TRAPPC6AO75865 159 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 ENPP1P22413 925 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 SUCLG1P53597 346 aaKnown RBP23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 CLDN20P56880 219 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 CARD18P57730 90 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 WIPI1Q5MNZ9 446 aaPredicted RBP23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 PPP1R14AQ96A00 147 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 ADGRG7Q96K78 797 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 SIGLEC12Q96PQ1 595 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 C11orf54Q9H0W9 315 aaPredicted RBP23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 DHDHQ9UQ10 334 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 POLR1DQ9Y2S0 133 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 DOCK10Q96BY6 2186 aa23.36■■□□□ 1.33
CCDC88C-205ENST00000553403 TRAV8-7A0A075B6U6 113 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 SPAARA0A1B0GVQ0 90 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 TMEM269A0A1B0GVZ9 245 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 CDRT15L2A8MXV6 281 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 EIF1AYO14602 144 aaKnown RBP23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 SMAD9O15198 467 aaKnown RBP23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 F10P00742 488 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 OR1C1Q15619 314 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 TMEM244Q5VVB8 128 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 KLHL24Q6TFL4 600 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 TMEM123Q8N131 208 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 OR6N1Q8NGY5 312 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 OR2V1Q8NHB1 315 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 ZNF385AQ96PM9 386 aaKnown RBP23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 NIPAL2Q9H841 368 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 EMC7Q9NPA0 242 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 HHLA2Q9UM44 414 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 LINC00854A0A1B0GVQ3 168 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 ANXA2P2A6NMY6 339 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 UBL3O95164 117 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 ANXA2P07355 339 aaKnown RBP23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 CFPP27918 469 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 PITPNAQ00169 270 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 HACD4Q5VWC8 232 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 FOXL2NBQ6ZUU3 175 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 ZIC4Q8N9L1 334 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 OR10S1Q8NGN2 331 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 ASB5Q8WWX0 329 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 B4GALT7Q9UBV7 327 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 FOXJ3Q9UPW0 622 aa23.35■■□□□ 1.33
CCDC88C-205ENST00000553403 CAMK2AQ9UQM7 478 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms