RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RPEQ96AT9 228 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 FOXN4Q96NZ1 517 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 GOLPH3Q9H4A6 298 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 UGT1A7Q9HAW7 530 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 UGT1A8Q9HAW9 530 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 STMN3Q9NZ72 180 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 MDFICQ9P1T7 246 aa4.3□□□□□ -1.72
SCFD1-208ENST00000553278 NOTCH4Q99466 2003 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 TCF20Q9UGU0 1960 aaKnown RBP4.29□□□□□ -1.72
SCFD1-208ENST00000553278 HIDE1A8MVS5 230 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 HACD1B0YJ81 288 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SRRM5B3KS81 715 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 H0YHG0 523 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 K7EMT4 169 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 UTS2O95399 124 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 LCA5LO95447 670 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 HPRT1P00492 218 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 CATP04040 527 aaKnown RBP4.29□□□□□ -1.72
SCFD1-208ENST00000553278 RHOCP08134 193 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 GGT1P19440 569 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SHC1P29353 583 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 IL12BP29460 328 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 RPS21P63220 83 aaKnown RBP4.29□□□□□ -1.72
SCFD1-208ENST00000553278 TPM4P67936 248 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SEMG2Q02383 582 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 LRRC63Q05C16 580 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SIGLEC14Q08ET2 396 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SLC39A6Q13433 755 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 C14orf177Q52M58 125 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 LRRC10Q5BKY1 277 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 CASC10Q5T4H9 136 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 ANKRD22Q5VYY1 191 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 H2AFVQ71UI9 128 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 ERO1BQ86YB8 467 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 LRRC8AQ8IWT6 810 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 TMEM61Q8N0U2 210 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 OR10G9Q8NGN4 311 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SUN5Q8TC36 379 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 OR51E1Q8TCB6 317 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 C7orf33Q8WU49 177 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 MRGPRFQ96AM1 343 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 CENPNQ96H22 339 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-208ENST00000553278 DEFB126Q9BYW3 111 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 SYT4Q9H2B2 425 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 STX18Q9P2W9 335 aaKnown RBP4.29□□□□□ -1.72
SCFD1-208ENST00000553278 ST3GAL6Q9Y274 331 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 C15orf41Q9Y2V0 281 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 KCNE3Q9Y6H6 103 aa4.29□□□□□ -1.72
SCFD1-208ENST00000553278 THSD7BQ9C0I4 1608 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 JCADQ9P266 1359 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 GAKO14976 1311 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 A0A0J9YXY3 114 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 NME4O00746 187 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ERI3O43414 337 aaKnown RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 TIMP1P01033 207 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 THY1P04216 161 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 TPM3P06753 285 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 CHTF8P0CG12 524 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 RAB5AP20339 215 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 HRH1P35367 487 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ARR3P36575 388 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 RAB7AP51149 207 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 PRPS1P60891 318 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 SLC35B1P78383 322 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 TRDNQ13061 729 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ART3Q13508 389 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 COA6Q5JTJ3 125 aaKnown RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 CLEC6AQ6EIG7 209 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 NPSR1Q6W5P4 371 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 RFLNAQ6ZTI6 216 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 MRPL55Q7Z7F7 128 aaKnown RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 CBLN2Q8IUK8 224 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 C17orf78Q8N4C9 275 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 LGALS14Q8TCE9 139 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 FAM151AQ8WW52 585 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 OR8D1Q8WZ84 308 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 CDKL2Q92772 493 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 FAM3DQ96BQ1 224 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 DYNLL2Q96FJ2 89 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 COL21A1Q96P44 957 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ZNF317Q96PQ6 595 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 BBS2Q9BXC9 721 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 GABARAPL3Q9BY60 117 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 FRMD8P1Q9BZ68 369 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ULBP2Q9BZM5 246 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 OR11A1Q9GZK7 315 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 ZNF275Q9NSD4 429 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 GGA2Q9UJY4 613 aa4.28□□□□□ -1.72
SCFD1-208ENST00000553278 RAI1Q7Z5J4 1906 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-208ENST00000553278 IGKV3D-15A0A087WSY6 115 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 A0A1B0GW15 77 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 FAM166BA8MTA8 275 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 XKRYO14609 159 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 CST4P01036 141 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 HSPB1P04792 205 aaKnown RBP4.27□□□□□ -1.73
SCFD1-208ENST00000553278 RPN2P04844 631 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 ZNF883P0CG24 379 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 PRPS2P11908 318 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 NQO2P16083 231 aa4.27□□□□□ -1.73
SCFD1-208ENST00000553278 GABRR1P24046 479 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms