RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ZNF879B4DU55 563 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 CYB5R3P00387 301 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 VSIG10L2P0DP72 767 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 CD28P10747 220 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 RPL4P36578 427 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 LIPAP38571 399 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 CSNK1A1P48729 337 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 MMP16P51512 607 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 SF3A3Q12874 501 aaKnown RBP eCLIP12.69□□□□□ -0.386e-9■■■■■ 32.1
CLSTN3-216ENST00000545663 COX10Q12887 443 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 FAM201AQ5SY85 155 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 WDR25Q64LD2 544 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 FAM91A1Q658Y4 838 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 LRFN4Q6PJG9 635 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF836Q6ZNA1 936 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 RFPL4BQ6ZWI9 263 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 ANKRD46Q86W74 232 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF440Q8IYI8 595 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 RBM15BQ8NDT2 890 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 WFDC9Q8NEX5 89 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF420Q8TAQ5 688 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 GTF2H4Q92759 462 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 VPS33AQ96AX1 596 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 WDFY2Q96P53 400 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 TRNT1Q96Q11 434 aaKnown RBP12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 MYLK2Q9H1R3 596 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 KIF17Q9P2E2 1029 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 CLN8Q9UBY8 286 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 AP3M1Q9Y2T2 418 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 GMEB1Q9Y692 573 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 LOC100509620A0A075B734 347 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 EVPLLA8MZ36 301 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 DBIP07108 87 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 NQO1P15559 274 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 TNFRSF1AP19438 455 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 CD33P20138 364 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 APLNRP35414 380 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 EMX1Q04741 257 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 PLP2Q04941 152 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 GNA13Q14344 377 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 MTX3Q5HYI7 312 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 LRIF1Q5T3J3 769 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF841Q6ZN19 808 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC16A14Q7RTX9 510 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 SERPINA11Q86U17 422 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 OR8B3Q8NGG8 313 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 TMEM54Q969K7 222 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 OR8B2Q96RD0 313 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC35A5Q9BS91 424 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 EFCAB1Q9HAE3 211 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 GCM1Q9NP62 436 aa12.68□□□□□ -0.38
CLSTN3-216ENST00000545663 IGKV1D-42A0A075B6H8 117 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 A0A087WUJ7 227 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 IGHV3-64DA0A0J9YX35 117 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 C5orf49A4QMS7 147 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 TMEM247A6NEH6 219 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 RNASEK-C17orf49H0YIS7 233 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 ENSAO43768 121 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 TIMM8AO60220 97 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 PTHP01270 115 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 MMP7P09237 267 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 STOMP27105 288 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 PPP1CBP62140 327 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 PSG7Q13046 419 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 FADDQ13158 208 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC36A2Q495M3 483 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 PABPC1L2AQ5JQF8 200 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 FAM69AQ5T7M9 428 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 ARPINQ7Z6K5 226 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 LRRC18Q8N456 261 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 ABHD4Q8TB40 342 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 POM121L2Q96KW2 1035 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC19A3Q9BZV2 496 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 NDE1Q9NXR1 346 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 GLTPQ9NZD2 209 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 EIF3KQ9UBQ5 218 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 FAM96BQ9Y3D0 163 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 CHST2Q9Y4C5 530 aa12.67□□□□□ -0.38
CLSTN3-216ENST00000545663 COX4I1P13073 169 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 TNFSF4P23510 183 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 CPT2P23786 658 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 HOXD3P31249 432 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 BIDP55957 195 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 NFYCQ13952 458 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 KRT72Q14CN4 511 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 MAPK11Q15759 364 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF404Q494X3 552 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 KLHL22Q53GT1 634 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 ZMAT1Q5H9K5 638 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC2A7Q6PXP3 512 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 LRRC74BQ6ZQY2 392 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 VASH1Q7L8A9 365 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 DHDDSQ86SQ9 333 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 HIPK4Q8NE63 616 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 OR4F17Q8NGA8 305 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 OR52P1PQ8NH57 321 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 MUC7Q8TAX7 377 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 OR2V2Q96R30 315 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 OR4F4Q96R69 305 aa12.66□□□□□ -0.38
CLSTN3-216ENST00000545663 SIRPDQ9H106 197 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms