RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	KCNAB1	Q14722	419 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	VWA2	Q5GFL6	755 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	THEM4	Q5T1C6	240 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	C1QL3	Q5VWW1	255 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	LRRC69	Q6ZNQ3	347 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	TMUB2	Q71RG4	321 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF627	Q7L945	461 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF584	Q8IVC4	421 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	OR5D14	Q8NGL3	314 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	RNF133	Q8WVZ7	376 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	FAM46B	Q96A09	425 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF501	Q96CX3	271 aa	Predicted RBP	11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	SEH1L	Q96EE3	360 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	AMELY	Q99218	206 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	TPSD1	Q9BZJ3	242 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	FGF21	Q9NSA1	209 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	SLC22A13	Q9Y226	551 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669	PLEKHA6	Q9Y2H5	1048 aa		11.7	□□□□□ -0.54
CPSF7-223	ENST00000544669		A0A1W2PNV4	684 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	hCG_1807616	A0A1W2PRN6	198 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	CDC14C	A4D256	554 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	RFPL4A	A6NLU0	287 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	RFPL4AL1	F8VTS6	287 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	LDLRAD4	O15165	306 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	DOK2	O60496	412 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	SRSF10	O75494	262 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	PNP	P00491	289 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	CD3D	P04234	171 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	CHRM2	P08172	466 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	TMIGD3	P0DMS9	266 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	BDKRB2	P30411	391 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	OR1D5	P58170	312 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	HSF1	Q00613	529 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	TLE3	Q04726	772 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	SRSF4	Q08170	494 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	EIF3I	Q13347	325 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	SQSTM1	Q13501	440 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	GK2	Q14410	553 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	SLC25A53	Q5H9E4	307 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	LRFN4	Q6PJG9	635 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	SLC22A24	Q8N4F4	322 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZDHHC22	Q8N966	263 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	OR6K3	Q8NGY3	331 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	KCNK17	Q96T54	332 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	NRSN2	Q9GZP1	204 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	CA10	Q9NS85	328 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	COMMD9	Q9P000	198 aa		11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	GPN3	Q9UHW5	284 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-223	ENST00000544669	GOSR2	O14653	212 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	OR4E1	P0C645	316 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	VSIG10L2	P0DP72	767 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	CXCL2	P19875	107 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF41	P51814	821 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	AFF3	P51826	1226 aa	Known RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	HLX	Q14774	488 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	ODF4	Q2M2E3	257 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	GSG1L	Q6UXU4	331 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	DCXR	Q7Z4W1	244 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	MUC20	Q8N307	709 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	JAGN1	Q8N5M9	183 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	C5orf34	Q96MH7	638 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	EDEM2	Q9BV94	578 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	RTN4R	Q9BZR6	473 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	TTYH1	Q9H313	450 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF576	Q9H609	170 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	TAS2R4	Q9NYW5	299 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZNF224	Q9NZL3	707 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	C19orf25	Q9UFG5	118 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	ING1	Q9UK53	422 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	EMC9	Q9Y3B6	208 aa		11.68	□□□□□ -0.54
CPSF7-223	ENST00000544669	SCN2A	Q99250	2005 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	IGLV3-32	A0A0A0MS00	114 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	LOC107986453	A0A1B0GWG9	222 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	ZSCAN5B	A6NJL1	495 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669		H0YC42	278 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	MS4A18	H0YCH9	400 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	BET1	O15155	118 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	PRKN	O60260	465 aa	Predicted RBP	11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	HEXB	P07686	556 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	FOLR1	P15328	257 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	HLA-G	P17693	338 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	RPS27	P42677	84 aa	Known RBP	11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	EFNB2	P52799	333 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	PMPCA	Q10713	525 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	MS4A18	Q3C1V0	323 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	RNASE10	Q5GAN6	216 aa	Known RBP	11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	OR5M10	Q6IEU7	315 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	FAAP20	Q6NZ36	180 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	PDZD9	Q8IXQ8	264 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	PLPP7	Q8NBV4	271 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	ST7L	Q8TDW4	575 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	SLC25A43	Q8WUT9	341 aa	Predicted RBP	11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	DNASE2B	Q8WZ79	361 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	SCGB3A2	Q96PL1	93 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	ARL6	Q9H0F7	186 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	SLC25A32	Q9H2D1	315 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	PPA2	Q9H2U2	334 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	G6PC2	Q9NQR9	355 aa		11.67	□□□□□ -0.54
CPSF7-223	ENST00000544669	SUSD2	Q9UGT4	822 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms