RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MED9Q9NWA0 146 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 MRPL22Q9NWU5 206 aaKnown RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 RASL12Q9NYN1 266 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 DSPPQ9NZW4 1301 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 A0A1W2PPH5 198 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ITGB8P26012 769 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 GNRHRP30968 328 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 RAP1AP62834 184 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 HTRA4P83105 476 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 REEP5Q00765 189 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF85Q03923 595 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 MDGA2Q7Z553 956 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 OR4D6Q8NGJ1 314 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 OR5D18Q8NGL1 313 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 GLYATL2Q8WU03 294 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 HAS2Q92819 552 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 MEGF10Q96KG7 1140 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ZFYVE21Q9BQ24 234 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 PLEKHM1Q9Y4G2 1056 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 WDR81Q562E7 1941 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 NPIPA2E9PIF3 369 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 NPIPA3F8WFD2 350 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 GLCEO94923 617 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 PVRP15151 417 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 H2BFSP57053 126 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 MRPL41Q8IXM3 137 aaKnown RBP12.96□□□□□ -0.33
LIMS1-215ENST00000544547 OR51T1Q8NGJ9 327 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 SECTM1Q8WVN6 248 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 EMC9Q9Y3B6 208 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-215ENST00000544547 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-215ENST00000544547 OR6C76A6NM76 312 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 VSTM5A8MXK1 200 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 NID1P14543 1247 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 DMKNQ6E0U4 476 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-215ENST00000544547 UBAC2Q8NBM4 344 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 ARRDC3Q96B67 414 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 OR11A1Q9GZK7 315 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 SLC5A7Q9GZV3 580 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.96□□□□□ -0.33
LIMS1-215ENST00000544547 C2orf42Q9NWW7 574 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 CA14Q9ULX7 337 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 ANK1P16157 1881 aa12.96□□□□□ -0.33
LIMS1-215ENST00000544547 RDH16O75452 317 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF16P17020 682 aaPredicted RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HNRNPA2B1P22626 353 aaKnown RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 VEGFBP49765 207 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 SLC26A5P58743 744 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 PMPCAQ10713 525 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HMGN3Q15651 99 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HFEQ30201 348 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 DMRTC1Q5HYR2 192 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 CARD17Q5XLA6 110 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 FJX1Q86VR8 437 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 SKA3Q8IX90 412 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HSD17B8Q92506 261 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 KIRREL1Q96J84 757 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 SPACA5Q96QH8 159 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 TAS2R4Q9NYW5 299 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF346Q9UL40 294 aaKnown RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 SCN3AQ9NY46 2000 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 DNASE2O00115 360 aaPredicted RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 SDCBPO00560 298 aaPredicted RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HRH1P35367 487 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 HAAOP46952 286 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 DUSP3P51452 185 aaPredicted RBP12.96□□□□□ -0.34
LIMS1-215ENST00000544547 PPP1R1AQ13522 171 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM64Q6YI46 380 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF600Q6ZNG1 722 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 TMPRSS5Q9H3S3 457 aa12.96□□□□□ -0.34
LIMS1-215ENST00000544547 PHYHO14832 338 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 PRKNO60260 465 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 LBX1P52954 281 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 DOC2BQ14184 412 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 ERV3-1Q14264 604 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 Q6ZNB5 142 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 MARCH3Q86UD3 253 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SULF2Q8IWU5 870 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 ZSCAN4Q8NAM6 433 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 OR9K2Q8NGE7 335 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 OR5B12Q96R08 314 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SUSD2Q9UGT4 822 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SIGLEC7Q9Y286 467 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SCAF4O95104 1147 aaKnown RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 TIMP1P01033 207 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 MAT1AQ00266 395 aaKnown RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 PLXDC1Q8IUK5 500 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 VN1R2Q8NFZ6 395 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SNIP1Q8TAD8 396 aaKnown RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 C6orf106Q9H6K1 298 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-215ENST00000544547 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 A8MXK9 166 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 HPP00738 406 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 CEBPBP17676 345 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 CDK3Q00526 305 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 ACSM1Q08AH1 577 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 HNF4GQ14541 408 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 PRSS53Q2L4Q9 553 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 SLC25A30Q5SVS4 291 aa12.95□□□□□ -0.34
LIMS1-215ENST00000544547 RAET1LQ5VY80 246 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms