RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 HTR5AP47898 357 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 GSK3BP49841 420 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 NUDT2P50583 147 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 AQP6Q13520 282 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 ENDOGQ14249 297 aaKnown RBP11.15□□□□□ -0.62
RTN3-213ENST00000543552 MTX3Q5HYI7 312 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 GPR139Q6DWJ6 353 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 ADCK1Q86TW2 530 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 CLDN22Q8N7P3 220 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 GTF3AQ92664 365 aaKnown RBP11.15□□□□□ -0.62
RTN3-213ENST00000543552 CMTM5Q96DZ9 223 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 NMNAT1Q9HAN9 279 aaPredicted RBP11.15□□□□□ -0.62
RTN3-213ENST00000543552 MED4Q9NPJ6 270 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 TBCCD1Q9NVR7 557 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 ENPP4Q9Y6X5 453 aa11.15□□□□□ -0.62
RTN3-213ENST00000543552 TEX13CA0A0J9YWL9 993 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 A0A1W2PRQ8 180 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 ZSCAN5BA6NJL1 495 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 H7C1C5 153 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 J3QW42 95 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 SURF4O15260 269 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 SGCEO43556 437 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 PLPP2O43688 288 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 DEAF1O75398 565 aaPredicted RBP11.14□□□□□ -0.63
RTN3-213ENST00000543552 UBOX5O94941 541 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 NDUFB2O95178 105 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 H1F0P07305 194 aaKnown RBP11.14□□□□□ -0.63
RTN3-213ENST00000543552 TNFRSF1AP19438 455 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 EPHA1P21709 976 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 SDHAP31040 664 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 LCN6P62502 163 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 KRR1Q13601 381 aaKnown RBP11.14□□□□□ -0.63
RTN3-213ENST00000543552 DGCR6Q14129 220 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 FGD3Q5JSP0 725 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 DCAF12L2Q5VW00 463 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 ST7LQ8TDW4 575 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 G6PC2Q9NQR9 355 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 ATPIF1Q9UII2 106 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 SAMD4AQ9UPU9 718 aaKnown RBP11.14□□□□□ -0.63
RTN3-213ENST00000543552 ADAM18Q9Y3Q7 739 aa11.14□□□□□ -0.63
RTN3-213ENST00000543552 CDC42EP2O14613 210 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 PRSS23O95084 383 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 NGFP01138 241 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 RHCEP18577 417 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 RGS6P49758 472 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 LSM6P62312 80 aaKnown RBP11.13□□□□□ -0.63
RTN3-213ENST00000543552 TNFAIP6P98066 277 aaPredicted RBP11.13□□□□□ -0.63
RTN3-213ENST00000543552 FHL1Q13642 323 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 KRT72Q14CN4 511 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 MESTQ5EB52 335 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 C8orf82Q6P1X6 216 aaPredicted RBP11.13□□□□□ -0.63
RTN3-213ENST00000543552 PGM2L1Q6PCE3 622 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 DNM1P34Q6PK57 102 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 C12orf54Q6X4T0 127 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 FAM122BQ7Z309 247 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 C1QL2Q7Z5L3 287 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 GLB1L2Q8IW92 636 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 SPICQ8N5J4 248 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 NANPQ8TBE9 248 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 SLC7A13Q8TCU3 470 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 FAM46AQ96IP4 442 aaKnown RBP11.13□□□□□ -0.63
RTN3-213ENST00000543552 Q96M85 177 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 GPX7Q96SL4 187 aaPredicted RBP11.13□□□□□ -0.63
RTN3-213ENST00000543552 SUCNR1Q9BXA5 334 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 MSL2Q9HCI7 577 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 EMC7Q9NPA0 242 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 SPAG4Q9NPE6 437 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 PLEK2Q9NYT0 353 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 PCDHB10Q9UN67 800 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 POLR1DQ9Y2S0 133 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 CACNG2Q9Y698 323 aa11.13□□□□□ -0.63
RTN3-213ENST00000543552 TRIM77I1YAP6 450 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 KHDRBS3O75525 346 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 FOXH1O75593 365 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 MDH1P40925 334 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 RPS6KA3P51812 740 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 SMIM11AP58511 58 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 ACTG1P63261 375 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 PSG7Q13046 419 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 CDK5R2Q13319 367 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 TBPL2Q6SJ96 375 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 THSD4Q6ZMP0 1018 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 VASH1Q7L8A9 365 aaPredicted RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 BPIFB2Q8N4F0 458 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 KLHL36Q8N4N3 616 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 SEMA6DQ8NFY4 1073 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 OR5L1Q8NGL2 311 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 RSRC1Q96IZ7 334 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 DCLRE1CQ96SD1 692 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 RBM4Q9BWF3 364 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 RERGLQ9H628 205 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 NRIP3Q9NQ35 241 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 UBAP1Q9NZ09 502 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 ABCD2Q9UBJ2 740 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 ASH2LQ9UBL3 628 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 KLHL21Q9UJP4 597 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 PURGQ9UJV8 347 aaKnown RBP11.12□□□□□ -0.63
RTN3-213ENST00000543552 AURKCQ9UQB9 309 aa11.12□□□□□ -0.63
RTN3-213ENST00000543552 NPTNQ9Y639 398 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms